Click here to switch to the map view.

The map label for this gene is yybR [H]

Identifier: 218231796

GI number: 218231796

Start: 3212623

End: 3213003

Strand: Reverse

Name: yybR [H]

Synonym: BCB4264_A3332

Alternate gene names: 218231796

Gene position: 3213003-3212623 (Counterclockwise)

Preceding gene: 218230905

Following gene: 218232272

Centisome position: 59.29

GC content: 33.07

Gene sequence:

>381_bases
ATGGATTGTTCAAATGAAAATAATATAAATTACCCATTTTTAAATAAATATTCTTGTCCAGTTGAAGCTATGGTTGAGGT
GATTGGAGGGAAATGGAAAGGGGTAATTTTGTATCATTTATTAGATGGTACAAAGCGGTTTAATGAATTAAAAAGATTAA
AACCAAATATCACACAAAGGATGTTAACACTGCAGCTGAGAGAACTTGAAGCTGATGGGATTATACATCGTGAAGTATAC
CGTGAAGTACCACCTAAAGTTGAATATTCGTTAACTGAGCTTGGTGAATCACTACGTCCAGTGATTCTATTAATGATGGA
ATGGGCAACTCATAATATGGAGAAGGTTTTGGAGAATAGGAATACGAAAAATAATAGTTAA

Upstream 100 bases:

>100_bases
TGTAAGTAAATTATATTTTTAAAGTAACACAGATACAAGTACGCACATTTATGTGGTATAGTATCAAAAAAGATACTATT
GATAAGGGAAGGGATTTATT

Downstream 100 bases:

>100_bases
GAGTTGAAATTGATATAGACGAGTTATGTGAAATAGTTGTAGAAATAAAAGGTGTTTCCATACGTGAAAACACCTTTTAT
TTCTATATTTTTTACTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MDCSNENNINYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPVILLMMEWATHNMEKVLENRNTKNNS

Sequences:

>Translated_126_residues
MDCSNENNINYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPVILLMMEWATHNMEKVLENRNTKNNS
>Mature_126_residues
MDCSNENNINYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPVILLMMEWATHNMEKVLENRNTKNNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=105, Percent_Identity=36.1904761904762, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14762; Mature: 14762

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCSNENNINYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPVILLMMEWATHNMEKVLENR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NTKNNS
CCCCCC
>Mature Secondary Structure
MDCSNENNINYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPVILLMMEWATHNMEKVLENR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NTKNNS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]