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The map label for this gene is yocR [H]

Identifier: 218231772

GI number: 218231772

Start: 1747381

End: 1748718

Strand: Direct

Name: yocR [H]

Synonym: BCB4264_A1841

Alternate gene names: 218231772

Gene position: 1747381-1748718 (Clockwise)

Preceding gene: 218232603

Following gene: 218234596

Centisome position: 32.25

GC content: 35.95

Gene sequence:

>1338_bases
ATGAATTCACAGCAATGGACATCGAAATTAGGTTTCGTATTAGCTGCAGCAGGTTCGGCAATTGGTCTTGGGGCGATTTG
GAAATTCCCATATATGGCCGGCATTGGAGGAGGCGGAGCGTTCTTCCTAATTTTTATCGGTTTCACATTATTAATTGGTT
TACCGCTATTATTAGCTGAATTTGTTATTGGAAGAAGTACACAAAAAGAGGCTGTCGATGCATATAGAGAGATTGCTCCT
AAAACGTTATGGCCTTGGTTAGGTAAATTAGGAATTGTAACATGTTTCATATTACTTTCTTTCTACAGTGTTGTAGGAGG
CTGGATTTTATTATATTTATGGAATGCAATTACAGGTAGACTATGGGAAGGAAATGGAGCATACGAAGCTACGTTTGGTG
AAATCATTTCCAATCCATATTTAGCAGTTGGATCACAGCTATTATTCATCCTTATTACTATTTTCATCGTAAGTAAAGGT
GTACAAAATGGTGTTGAAAAAGTAAATAAATATTTCATGCCAGCATTATTCGTTTTATTCTTTGTATTAATCGTTCGTGC
ACTTACATTAGATGGTGCTGGAGAAGGCGTTCGTTTCTTCTTACAACCTGATTTCTCACATGTAACATCAGAAGTTATAT
TATACGCAATGGGGCAATCGTTCTTCTCATTATCTGTCGGGGTAGCCGTTATGGTAACGTATAGCTCATACTTACCGAAA
GAAGAAAGCTTACCACGTTCAGCATTTTCTATCGTAGCCTTAACTCTTGTTATTACATTACTTGCAGGACTTGCAATTTT
CCCAGTTGTGTTCGCATTTGGAATGGAACCATCTCAAGGGCCGGGACTATTATTTATCGTGTTGCCAGCTATTTTCAGTA
AAATGGCGTTCGGAAAATTATTCTTCATTGTTTTCTTATTACTATTCTTCTTCGCTACGATTACATCAGCAATTTCGATG
TTAGAAATTAGTGTTGCATCGTTAACATCAAAAGGTAAAGGGAAACGTGAAAAAATGGCCTTAATCGTAGGGTTATTAAT
CTTCGTTGTTGGGGTACCATCAGCATTATCATTCGGTATATTAAGTGATCTGAAGATTTTCGGGAAGACAGTCTTTGATT
TAGCGGACTATGCAGTAAGTAACGTATTAATGCCACTTGGTGTATTATTAGTTTCTATCTTTGTTCCTTTACAAATGAAG
AAAGATGTATTAATGAAAGAGCTAGGTGTAAGTAAAAATAAAGGCTATAAACTATTCGTATTATGGTTATTCTTACTTCG
TTATATCGCACCAATTGCGATTATTATCGTATTCTTAAATGTACTTGGCATTATATAA

Upstream 100 bases:

>100_bases
ATTATTAGGGAGGAAGTGAACGTATTAGAAAAGAGTATTGATAGAACAATATAAATACCGAATTGTAACAAAGAAAAAGA
GATAGAGAGGAGATTAACAA

Downstream 100 bases:

>100_bases
AAAGAAAGGTAGCGTATCATACAAAGATACGCTACCTTTTTATTTTGCTCTTTTTTGCAATTCATTTACTGTTACGAACT
GATAGCCCTTCTTAGATAAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSHVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVALTLVITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKLFFIVFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLQMK
KDVLMKELGVSKNKGYKLFVLWLFLLRYIAPIAIIIVFLNVLGII

Sequences:

>Translated_445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSHVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVALTLVITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKLFFIVFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLQMK
KDVLMKELGVSKNKGYKLFVLWLFLLRYIAPIAIIIVFLNVLGII
>Mature_445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSHVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVALTLVITLLAGLAIFPVVFAFGMEPSQGPGLLFIVLPAIFSKMAFGKLFFIVFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLQMK
KDVLMKELGVSKNKGYKLFVLWLFLLRYIAPIAIIIVFLNVLGII

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=490, Percent_Identity=25.7142857142857, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI171184408, Length=407, Percent_Identity=25.5528255528256, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI171184406, Length=407, Percent_Identity=25.5528255528256, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI171184404, Length=407, Percent_Identity=25.5528255528256, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI7657587, Length=403, Percent_Identity=25.0620347394541, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI188528618, Length=427, Percent_Identity=25.5269320843091, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI134304856, Length=399, Percent_Identity=27.0676691729323, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI197276623, Length=450, Percent_Identity=25.3333333333333, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI54607094, Length=450, Percent_Identity=25.3333333333333, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI4507041, Length=502, Percent_Identity=23.5059760956175, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI289191351, Length=401, Percent_Identity=24.1895261845387, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI4557046, Length=401, Percent_Identity=24.1895261845387, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI289191377, Length=386, Percent_Identity=24.3523316062176, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI4507043, Length=399, Percent_Identity=24.812030075188, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI33354281, Length=300, Percent_Identity=26, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=26.158940397351, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI194018524, Length=301, Percent_Identity=29.2358803986711, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI11181770, Length=292, Percent_Identity=25.3424657534247, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI51468073, Length=531, Percent_Identity=22.9755178907721, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21361693, Length=110, Percent_Identity=35.4545454545455, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI5032097, Length=354, Percent_Identity=25.4237288135593, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI12408638, Length=270, Percent_Identity=25.5555555555556, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI300360519, Length=267, Percent_Identity=26.9662921348315, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI218563756, Length=346, Percent_Identity=26.5895953757225, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI55749589, Length=287, Percent_Identity=25.0871080139373, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI92859670, Length=221, Percent_Identity=25.7918552036199, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI289191353, Length=215, Percent_Identity=26.5116279069767, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=414, Percent_Identity=23.6714975845411, Blast_Score=118, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17555248, Length=439, Percent_Identity=25.9681093394077, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17554804, Length=466, Percent_Identity=25.1072961373391, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI212642127, Length=425, Percent_Identity=23.0588235294118, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI133952791, Length=247, Percent_Identity=29.9595141700405, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534083, Length=436, Percent_Identity=21.3302752293578, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136952, Length=413, Percent_Identity=25.6658595641646, Blast_Score=144, Evalue=9e-35,
Organism=Drosophila melanogaster, GI281364394, Length=415, Percent_Identity=26.2650602409639, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI28574704, Length=415, Percent_Identity=26.2650602409639, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI17136950, Length=415, Percent_Identity=26.2650602409639, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI28574702, Length=415, Percent_Identity=26.2650602409639, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24762620, Length=412, Percent_Identity=26.9417475728155, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24639514, Length=504, Percent_Identity=24.6031746031746, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI221329674, Length=503, Percent_Identity=24.6520874751491, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24639516, Length=524, Percent_Identity=23.6641221374046, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI45550877, Length=517, Percent_Identity=24.1779497098646, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24661428, Length=355, Percent_Identity=29.0140845070423, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI45551183, Length=424, Percent_Identity=25.2358490566038, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI281365034, Length=409, Percent_Identity=25.4278728606357, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=27.6094276094276, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI45551088, Length=372, Percent_Identity=25.5376344086022, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639853, Length=511, Percent_Identity=26.614481409002, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24652942, Length=372, Percent_Identity=25.5376344086022, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921936, Length=399, Percent_Identity=25.8145363408521, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI281363702, Length=362, Percent_Identity=25.9668508287293, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24582567, Length=398, Percent_Identity=25.3768844221106, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281363700, Length=338, Percent_Identity=25.7396449704142, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24654186, Length=313, Percent_Identity=26.1980830670927, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19921352, Length=212, Percent_Identity=29.2452830188679, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24584353, Length=212, Percent_Identity=29.2452830188679, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48511; Mature: 48511

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]