Click here to switch to the map view.

The map label for this gene is ydfS [H]

Identifier: 218231596

GI number: 218231596

Start: 2549503

End: 2550213

Strand: Reverse

Name: ydfS [H]

Synonym: BCB4264_A2639

Alternate gene names: 218231596

Gene position: 2550213-2549503 (Counterclockwise)

Preceding gene: 218235393

Following gene: 218232279

Centisome position: 47.06

GC content: 30.1

Gene sequence:

>711_bases
GTGTCTGAACATATAGAGATTATTTTGAGAACACTGTTATCTTTCTCGATTTTATTTATCGGAGCTAAAATATTAGGAAA
GCAAATTATCGCTGAAATGAATACCTTTGATTTTATTGGTGCTATCTCTATCGGAAGTATTATTGCAAATTTAGCATTTA
ATTTAAATGTAAAAACTCATCATGCAGTCATCGCTTTTCTTATTTTAGTATTTATCATTCTAATGGTTAGCTATATATCC
ATGAAAAGTCGGATAGGGAGAAAAATATTTGCTGGAAATCCGACAGTCATTATTGAAAATGGGAAAATTCTAGAAAATAA
TATGCGGAAAATGCGCTATTCTCTAGATTATTTAAACCAGCAATTAAGAGAGAATGGTATTTTCAACATTGAAGAAGTTC
TTTATGTCGTAGTTGAAACAAATGGTAAGATATCTGTTTTGAAAAAACCTGAATATCGTAATGTTACAAAACAAGATTTG
AATATACCAATAAAAAAAGAGTCTAAACTCCCCATCGAGCTAATTATGGATGGAGAAATTATGACAGAAAACCTAAGACA
AAACAATCAGACAGAGTTAGGGTTACAATGTGAACTAAAAAAACGTAACCTTCGCTACAAAGATATTACATATGCTGTAC
TTGCAGCAAATGGAAATATTTATATTGATACATATAAAGATAACATTACTTCTCCAATGGACCAAGAATAG

Upstream 100 bases:

>100_bases
TAATGCTATTGAACATAATAAATTCTTTTACAATGATACATACTATCCTTATATAAATTATTATAATACGAACATGCAAT
CCTAAAAGGAGGCGCTACTT

Downstream 100 bases:

>100_bases
GCTATTTCTTCTAAAAATACATGTGAACATATCGTTGTAATTCTTCCGCAAATGTTTGTAGTTCATCTTGAACGATCCAT
AAGAAAATATCATCCTTTCT

Product: YdfS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSEHIEIILRTLLSFSILFIGAKILGKQIIAEMNTFDFIGAISIGSIIANLAFNLNVKTHHAVIAFLILVFIILMVSYIS
MKSRIGRKIFAGNPTVIIENGKILENNMRKMRYSLDYLNQQLRENGIFNIEEVLYVVVETNGKISVLKKPEYRNVTKQDL
NIPIKKESKLPIELIMDGEIMTENLRQNNQTELGLQCELKKRNLRYKDITYAVLAANGNIYIDTYKDNITSPMDQE

Sequences:

>Translated_236_residues
MSEHIEIILRTLLSFSILFIGAKILGKQIIAEMNTFDFIGAISIGSIIANLAFNLNVKTHHAVIAFLILVFIILMVSYIS
MKSRIGRKIFAGNPTVIIENGKILENNMRKMRYSLDYLNQQLRENGIFNIEEVLYVVVETNGKISVLKKPEYRNVTKQDL
NIPIKKESKLPIELIMDGEIMTENLRQNNQTELGLQCELKKRNLRYKDITYAVLAANGNIYIDTYKDNITSPMDQE
>Mature_235_residues
SEHIEIILRTLLSFSILFIGAKILGKQIIAEMNTFDFIGAISIGSIIANLAFNLNVKTHHAVIAFLILVFIILMVSYISM
KSRIGRKIFAGNPTVIIENGKILENNMRKMRYSLDYLNQQLRENGIFNIEEVLYVVVETNGKISVLKKPEYRNVTKQDLN
IPIKKESKLPIELIMDGEIMTENLRQNNQTELGLQCELKKRNLRYKDITYAVLAANGNIYIDTYKDNITSPMDQE

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family [H]

Homologues:

Organism=Escherichia coli, GI1787135, Length=141, Percent_Identity=26.9503546099291, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007353
- InterPro:   IPR023090 [H]

Pfam domain/function: PF04239 DUF421 [H]

EC number: NA

Molecular weight: Translated: 27001; Mature: 26870

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHIEIILRTLLSFSILFIGAKILGKQIIAEMNTFDFIGAISIGSIIANLAFNLNVKTH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
HAVIAFLILVFIILMVSYISMKSRIGRKIFAGNPTVIIENGKILENNMRKMRYSLDYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCEEHHHHHHHHHHHHHHHHH
QLRENGIFNIEEVLYVVVETNGKISVLKKPEYRNVTKQDLNIPIKKESKLPIELIMDGEI
HHHHCCCCCHHHEEEEEEECCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCHH
MTENLRQNNQTELGLQCELKKRNLRYKDITYAVLAANGNIYIDTYKDNITSPMDQE
HHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SEHIEIILRTLLSFSILFIGAKILGKQIIAEMNTFDFIGAISIGSIIANLAFNLNVKTH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
HAVIAFLILVFIILMVSYISMKSRIGRKIFAGNPTVIIENGKILENNMRKMRYSLDYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCEEHHHHHHHHHHHHHHHHH
QLRENGIFNIEEVLYVVVETNGKISVLKKPEYRNVTKQDLNIPIKKESKLPIELIMDGEI
HHHHCCCCCHHHEEEEEEECCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCHH
MTENLRQNNQTELGLQCELKKRNLRYKDITYAVLAANGNIYIDTYKDNITSPMDQE
HHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]