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The map label for this gene is yhdP [H]

Identifier: 218231515

GI number: 218231515

Start: 1955895

End: 1957202

Strand: Reverse

Name: yhdP [H]

Synonym: BCB4264_A2050

Alternate gene names: 218231515

Gene position: 1957202-1955895 (Counterclockwise)

Preceding gene: 218230786

Following gene: 218235382

Centisome position: 36.12

GC content: 33.64

Gene sequence:

>1308_bases
TTGGACATATTAAATATTTTTCTCATCTTTGTACTTATTCTTATTTCTGGCTTTTTCGTTGCATCAGAATTCGCTGTTGT
AAAAGTACGAAAAAGTCGAATTGACCAACTTGCAAATGAAGGTAATAAACAAGCTTTAGCTGCAAGAAGCGTCCTATCTA
ATTTAGATGTTTATTTATCAGCTTGTCAGCTCGGAATTACAATCACTTCTTTAGGGCTTGGTTGGCTTGGTGAACCGACT
GTGGAACATATACTACGACCGCTCTTTGAAAAAATTAATATTACTGGAACAATGGCTAACACTTTATCTTTTGTTATTGC
TTTTAGTGTTATTACATTTTTCCACGTTGTATTAGGTGAATTAGTTCCAAAGTCTTTCGCAATTCAAAAAGCAGAAGCAA
TCACACTCAAATTTGCAAGACCGCTTATTTTATTTGATAAAATTATGTATCCATTCATTTGGCTACTCAATAGTACAGCT
ATATTTTTCACAAAACTACTCGGATTAGAACCTGCGAAGGAAAGTGAACTTGCTCATTCTGAAGAGGAATTGCGACTCAT
TTTAGGTGAAAGTTTTAAAAGCGGTGAAATAAACCAAACCGAATATAAATATGTAAATAACATTTTTGAATTTGATGATC
GAGTTGCGAAAGAAATTATGGTTCCTCGTACCGAAATGATTTGCTTGTCTACTGAAAATACGTTAGAAGAAAATATGGAT
ATCGTCGCTACTGAAAAATATACACGCTATCCAATCATTGAAAAAGATAAAGATGATATCATTGGGATGATCAATACGAA
AGAAGTATTCCATGATCAAACGAAAGGTATTTATAAACCACTTGAATCTTATATACATCCTGTTCTAACTGTATTTGAAA
CAGTTCCAATTCGTAAAACGTTAGTCCACCTTCAAAAAAATCGCGTTCAGATGGCAATCGTTATGGATGAATATGGTGGT
ACTGCCGGACTTTTAACGATGGAAGATATTCTTGAAGAAATCATTGGAGAAATTCAAGATGAATTCGATGCTGATGAATC
ACCTATGATTGAAAAGCGTACACCTAAGCTTACTGTTTTAGATGGAAAGGTGCTTATTTCTGAAGTAAATGATATGTTTG
GCCTACATATTGATGATAGTGATTTAGATACAATCGGAGGATGGCTTCTCTCTCAAGCAGTTGACTTAAATATTGAAGCT
GGCTATTCCATTGAATACGCTGGTTTTCAATTTAAAGTATTAGAACTTGATGGACATCAAGTCAAAAAAGTTGCTGTACA
TAAACTAGATATTAAAAAGGAGCTATAA

Upstream 100 bases:

>100_bases
TTTTCCTTTGACTATTCTTTTCATTTGGATTTATTATAAAAGTATAACATAATTGCAGGAGGTGACATCTTTATTCCAGA
CCTTGGAATGGAGAACACGC

Downstream 100 bases:

>100_bases
AGTGACTGTTTTATTAACAATTTGTATCATTGCCTGTTTCGTTGTTTCATTTCTCGCCTTTATTTATCCAATTATCCCTG
GCATACTAGCTGTCTGGGCT

Product: CBS domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVLSNLDVYLSACQLGITITSLGLGWLGEPT
VEHILRPLFEKINITGTMANTLSFVIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKESELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIYKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMAIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDDSDLDTIGGWLLSQAVDLNIEA
GYSIEYAGFQFKVLELDGHQVKKVAVHKLDIKKEL

Sequences:

>Translated_435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVLSNLDVYLSACQLGITITSLGLGWLGEPT
VEHILRPLFEKINITGTMANTLSFVIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKESELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIYKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMAIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDDSDLDTIGGWLLSQAVDLNIEA
GYSIEYAGFQFKVLELDGHQVKKVAVHKLDIKKEL
>Mature_435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVLSNLDVYLSACQLGITITSLGLGWLGEPT
VEHILRPLFEKINITGTMANTLSFVIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKESELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIYKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMAIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDDSDLDTIGGWLLSQAVDLNIEA
GYSIEYAGFQFKVLELDGHQVKKVAVHKLDIKKEL

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=394, Percent_Identity=49.238578680203, Blast_Score=394, Evalue=1e-110,
Organism=Escherichia coli, GI1790664, Length=436, Percent_Identity=22.4770642201835, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI145693175, Length=418, Percent_Identity=24.1626794258373, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1786879, Length=270, Percent_Identity=31.1111111111111, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082033, Length=232, Percent_Identity=22.4137931034483, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49180; Mature: 49180

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVLSNLDVYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ACQLGITITSLGLGWLGEPTVEHILRPLFEKINITGTMANTLSFVIAFSVITFFHVVLGE
HHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTAIFFTKLLGLEPAKESELAHS
HCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHCC
EEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIYKPLESYIHPVLTVFETVPIRKT
EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVHLQKNRVQMAIVMDEYGGTAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVL
HHHHHHCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DGKVLISEVNDMFGLHIDDSDLDTIGGWLLSQAVDLNIEAGYSIEYAGFQFKVLELDGHQ
CCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHEEEEECCCEEEECCEEEEEEECCCCH
VKKVAVHKLDIKKEL
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVLSNLDVYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ACQLGITITSLGLGWLGEPTVEHILRPLFEKINITGTMANTLSFVIAFSVITFFHVVLGE
HHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTAIFFTKLLGLEPAKESELAHS
HCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHCC
EEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIYKPLESYIHPVLTVFETVPIRKT
EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVHLQKNRVQMAIVMDEYGGTAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVL
HHHHHHCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DGKVLISEVNDMFGLHIDDSDLDTIGGWLLSQAVDLNIEAGYSIEYAGFQFKVLELDGHQ
CCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHEEEEECCCEEEECCEEEEEEECCCCH
VKKVAVHKLDIKKEL
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]