| Definition | Bacillus cereus B4264, complete genome. |
|---|---|
| Accession | NC_011725 |
| Length | 5,419,036 |
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The map label for this gene is oppD [H]
Identifier: 218231380
GI number: 218231380
Start: 920563
End: 921555
Strand: Direct
Name: oppD [H]
Synonym: BCB4264_A0948
Alternate gene names: 218231380
Gene position: 920563-921555 (Clockwise)
Preceding gene: 218233551
Following gene: 218235833
Centisome position: 16.99
GC content: 41.39
Gene sequence:
>993_bases GTGTCTGAAAAACTACTAGAAGTGAAAAATTTAAAGACTTCTTTTTTCATAGAAAGTGGCGAAGTTGAAGCGGTTCGCGG CGTTACATTTCGCTTAAATAAAGGAGAAGTAGTCGGTATCGTTGGGGAATCTGGAAGCGGGAAGAGTGTAATGGCGAAGT CTGTTATGTCTCTCGTTACGTCACCAGGAAAAGTGAAAGAAGGGGAAATCCTTTTTCATAATGAAAACATACTTTCTAAA TCTGAAAAAGAATTGCGTTCTATTAGAGGAAATCAAATTTCACTTATCTCTCAAGACCCAATGTCAGCGCTAAATCCGGT CGTGAAAATTGGAAAACAAATGACGGAAGTAATTATAAGGCATCAAAAAGTGAAAAAGAAAGAAGCAGAGCAGATCGCGA TTAACTTGTTAAAACAAGTCGGCCTTTCGTCACCAGAAGAAAGGGTAAAACAATATCCGCATGAACTAAGCGGAGGTATG AAGCAGCGGGTTATGATCGCAATGGCGATGTCTTGTACCCCTGACCTTCTTATTGCGGACGAACCGACGACTGCACTTGA TGTAACGATACAAGCACAAATACTAGATTTAATGAAAAACTTGAAGAACGAAATGAATATGGCGTTACTTCTTATTACGC ATGACTTAGGAATTGTCGCGCAAAACTGTACGCGCGTTATCGTTATGTACGGCGGGCTTATTATGGAAGAAGGACCTGTA CTTGATATTTTCCAATCGCCGAATCATCCATATACGAAAGGGTTATTAAACTCTCTGCCAAAAATAGCGAACGGCGTAAA AGAAAGACTCGCTCCTATTCAAGGTGTAACGCCAAACTTATTAAACCCACCACAAGGTTGCCCGTTCGCAGAGCGTTGCC CGCATGCGATGGACATTTGTGAAAAAGAACGTCCACCATATTTTGAAATCGGAAACGAAAGACGTTCCATGTGCTGGCTA AACGATAGGGCGGTAGGTGATTTTCATGCATGA
Upstream 100 bases:
>100_bases TACTTAGTTTTAACGTAATTGGTGAAGCATTGAAGAAAGCTTTCGCACCAAAAGGAGCCGGACATGAAAACTAAAGTGTT AAGTGAAAGGAGTGAGAAGC
Downstream 100 bases:
>100_bases AGAAAACTTAATTGAAGTTCGGAACTTAAAAAAGTATTTTCCTATTAAAAAAGGACTATTCGGCAGAAAAACAGAGCAAT TAAAAGCAGTCGATGATTTA
Product: oligopeptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGM KQRVMIAMAMSCTPDLLIADEPTTALDVTIQAQILDLMKNLKNEMNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGNERRSMCWL NDRAVGDFHA
Sequences:
>Translated_330_residues MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGM KQRVMIAMAMSCTPDLLIADEPTTALDVTIQAQILDLMKNLKNEMNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGNERRSMCWL NDRAVGDFHA >Mature_329_residues SEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSKS EKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGMK QRVMIAMAMSCTPDLLIADEPTTALDVTIQAQILDLMKNLKNEMNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPVL DIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGNERRSMCWLN DRAVGDFHA
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=225, Percent_Identity=28.4444444444444, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=24.6153846153846, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=27.1966527196653, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI153792144, Length=227, Percent_Identity=25.5506607929515, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=48.4276729559748, Blast_Score=310, Evalue=9e-86, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=49.0445859872611, Blast_Score=306, Evalue=1e-84, Organism=Escherichia coli, GI1787759, Length=328, Percent_Identity=45.1219512195122, Blast_Score=282, Evalue=2e-77, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=46.2121212121212, Blast_Score=244, Evalue=6e-66, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=45.9770114942529, Blast_Score=237, Evalue=7e-64, Organism=Escherichia coli, GI1787500, Length=314, Percent_Identity=39.171974522293, Blast_Score=218, Evalue=3e-58, Organism=Escherichia coli, GI1789962, Length=319, Percent_Identity=32.9153605015674, Blast_Score=206, Evalue=1e-54, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=35.5263157894737, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1787758, Length=327, Percent_Identity=34.2507645259939, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=34.3629343629344, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=37.6068376068376, Blast_Score=150, Evalue=9e-38, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.183908045977, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1786398, Length=254, Percent_Identity=30.3149606299213, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788225, Length=258, Percent_Identity=31.3953488372093, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=35.4066985645933, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787029, Length=236, Percent_Identity=31.7796610169492, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1789032, Length=274, Percent_Identity=29.1970802919708, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786703, Length=238, Percent_Identity=30.672268907563, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=33.953488372093, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788644, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=28.2786885245902, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=30.672268907563, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=30, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87081834, Length=245, Percent_Identity=31.4285714285714, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787370, Length=248, Percent_Identity=27.4193548387097, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=26.3779527559055, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=28.125, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.0469483568075, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=27.5471698113208, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=25.8196721311475, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082267, Length=240, Percent_Identity=25.8333333333333, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789991, Length=270, Percent_Identity=30, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=27.1966527196653, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=28.448275862069, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787792, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787143, Length=248, Percent_Identity=31.0483870967742, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=25.6637168141593, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=29.4372294372294, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1787112, Length=241, Percent_Identity=29.045643153527, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=212, Percent_Identity=27.8301886792453, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=25.7383966244726, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=24.2290748898678, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=258, Percent_Identity=23.6434108527132, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1790467, Length=243, Percent_Identity=24.2798353909465, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=24.1803278688525, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789864, Length=268, Percent_Identity=25.7462686567164, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=30.6976744186047, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787041, Length=222, Percent_Identity=24.7747747747748, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786253, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=24.6511627906977, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789586, Length=189, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=218, Percent_Identity=33.0275229357798, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI25146777, Length=223, Percent_Identity=28.2511210762332, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71984940, Length=185, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=25.4237288135593, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=25.4237288135593, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211017, Length=236, Percent_Identity=25.4237288135593, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17569143, Length=220, Percent_Identity=31.3636363636364, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=268, Percent_Identity=26.1194029850746, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=224, Percent_Identity=25.8928571428571, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI212646699, Length=249, Percent_Identity=27.710843373494, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI19920532, Length=222, Percent_Identity=26.5765765765766, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24580930, Length=222, Percent_Identity=26.5765765765766, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007328, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574150, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=30.4545454545455, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI85726357, Length=269, Percent_Identity=25.6505576208178, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=27.1111111111111, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36481; Mature: 36350
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT CCCHHHHHHCCCEEEEEECCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIR CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH HQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCTPDLLIAD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCEEEEC EPTTALDVTIQAQILDLMKNLKNEMNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV CCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHCCEEECCCCE LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDIC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH EKERPPYFEIGNERRSMCWLNDRAVGDFHA HCCCCCCEEECCCCCCEEEECCCCCCCCCC >Mature Secondary Structure SEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT CCHHHHHHCCCEEEEEECCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIR CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH HQKVKKKEAEQIAINLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCTPDLLIAD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCEEEEC EPTTALDVTIQAQILDLMKNLKNEMNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPV CCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHCCEEECCCCE LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDIC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH EKERPPYFEIGNERRSMCWLNDRAVGDFHA HCCCCCCEEECCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]