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The map label for this gene is yhcF [H]

Identifier: 218231280

GI number: 218231280

Start: 1360260

End: 1360640

Strand: Direct

Name: yhcF [H]

Synonym: BCB4264_A1407

Alternate gene names: 218231280

Gene position: 1360260-1360640 (Clockwise)

Preceding gene: 218233288

Following gene: 218232062

Centisome position: 25.1

GC content: 37.01

Gene sequence:

>381_bases
ATGAAAATAGAGTTTTCTCCAAATACACCAATTTACATTCAGGTAATGGAATACATAAAAAAAGAGATCGTAACAGGACA
TTTATTGCCTGGTGATAAAATTCCCTCTGTCCGTGAATTAGCGAGTGAATTACAAGTGAATCCAAATACGATTCAGCGTA
CATTTCAAGAGCTAGAACGGGATGGAGTTGTTGTCACACGTAGAGGAATGGGACGGTATGTAACGAATGAAGGGGAGAAA
ATTATGGAGCTGCGAAAAGAGATGGCGAAAGAATTACTTCATTCTTTTATAGATGGAATGGACAATTTAGGTTTTTCAGA
AGAAGAAATTCTTACAATTCTTCGTTCTTCATTACATGATAAGAGGGAGGAGAGCCAATGA

Upstream 100 bases:

>100_bases
GTTTAACGGATAGAACTTTTTTGTAATTAAATGGGTATTTACAAACCTTTTGTATCGGTGTATTATTTAACTAGTACACC
GATACAAAAGGAGGGAAGAA

Downstream 100 bases:

>100_bases
CAGAGCTATTGAAAATAGAAAACTTATGGAAGAGATACGGATTAAAAGCAGTGATCCGTGAATTAAACATAGAGATTACG
GAAGGGAAAATCGTTGGGCT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMGRYVTNEGEK
IMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHDKREESQ

Sequences:

>Translated_126_residues
MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMGRYVTNEGEK
IMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHDKREESQ
>Mature_126_residues
MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMGRYVTNEGEK
IMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHDKREESQ

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14592; Mature: 14592

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER
CEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DGVVVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHD
CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KREESQ
HHHCCC
>Mature Secondary Structure
MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER
CEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DGVVVTRRGMGRYVTNEGEKIMELRKEMAKELLHSFIDGMDNLGFSEEEILTILRSSLHD
CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KREESQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]