Click here to switch to the map view.

The map label for this gene is tsr [C]

Identifier: 218231189

GI number: 218231189

Start: 3411175

End: 3413157

Strand: Reverse

Name: tsr [C]

Synonym: BCB4264_A3533

Alternate gene names: 218231189

Gene position: 3413157-3411175 (Counterclockwise)

Preceding gene: 218231615

Following gene: 218231729

Centisome position: 62.98

GC content: 33.64

Gene sequence:

>1983_bases
GTGTTTAATATAAAAGAAAGATTGGGGCAAATAAAGCTTAAAACGAAGTTGTCTATGGCATTTATAGCAATATTAATTAT
ACCAAGCCTTATCGTAGGAGTATCATCTTATAATAAATCAAAAACAGATCTTAATGAAACAATTCTACAATCAGCAAAAG
ATAATATAAGTATTTTAGATAAGATTGTTGATGATGAATTAGAAAATAAGCATATAGATATCACTCATTTTGCAAAGGTA
CTCACACAAGGGGATTATAATCCTGAACAATCGCAAAATGTACAGAATAAATTTGATCAATATATACAGTTACATCCAGA
GATAGAAACGATTTATACGGCATCCAGTAACAATCAATTTATTCATGCACCTGTTGGAAAAATACCAGAAGGGTTTAATC
CGCTAGAAAGCAGTTGGTATAAGGATGCAGTAAAAGCAGATGGAGAGATTATTGTTTCATCTCCATATAAATCAAAGTCT
ACAGGAAATATGGTAATTGCAATTGCAAAGCAGAATGCAGATAAAAGTGGTGTCATTGGCGTAGATTTGAATATTAAAGA
TATCGTAAAAACATCCAAAATGATAAAAATTGGGAAGCAAGGATTTGTATCTATAGTTAGTCAAGATAAAACTATAGTTG
TTCATCCATCACTAAAACCTGGAGAGAAATTAGATAAAACTTTAGTGGATGAATTGTACAAGACAGAAGATGGAGTAATT
ACTTATAGCCTCAATGGTGAAGATCGAAACATAAGCTTTAAGACAAATAAAAAAACAGGTTGGAAAATAGCTGGCGTAAT
GCCTACGAAAGAAATTGAAGAAGCTACCAATCCTATTTTTTATAAAACGCTCACTATAATAGGTGCTTCATTATTGTTAG
GTGGAATTGTAATTCTATTCATACTCAAATCTATAATTACTCCACTAAGACAATTAGTCATTTCAGCTCAAAGAATTAGT
CAAGGAGATTTAACCGAGAAAATAGATATTCGTTCAAAGGATGAACTTGGTCAATTAGGTGGTAGTTTCAATACAATGGC
AGAGTCGTTACGTAATATTATTTCTCAAATTAACACATCTGCAGGACATGTAGCTGCGTCTTCTGAGGAACTAACTGCTA
GTGTAGAGCAAGCAAGTGTTGCGACAGAACAAATTACAAAAGAGATGGAAGAAATCTCGAACAGTGCAGAGGTTCAAAAT
AATGAAGTTGAGTCTGGAGCTGAATTAATTGGTGAGGTAACACGAAATATTCAATACGTAGCTGAGAATGCTTCTGAAGT
ATCGGCTTCATCCATATACACTAAACAAAAAGCCAATGAAGGTGAACAATTAGTAGAACAAACTGTAACACAAATGCAGT
CTATCCATCACTCTGTTTCTCAATCCGATAATGTCATAAAATTATTAGATAAGAAATCACAGCAAATTGGCAGTATATTA
GAAGCGATTCAAAATATTGCGGAACAAACAAATTTATTAGCATTAAATGCAGCGATTGAAGCAGCTAGAGCTGGGGAACA
GGGGAGAGGGTTTGCAATTGTTGCTGATGAAGTTAGAAAGTTGGCGGAGCAATCATCCGAATCTTCAATGGAAATTGGAA
GTTTAATTAAGGAAATACAAGCAGACGTACATGAGACTGTAAAAGCTATGAATGAAGTAGGCGTAGAAGTACAGTCGGGA
ATTAAGGTTGCGAATGATACAAAACAAAGTTTTTATGAGATTTCAAAATCTGCAAATGATATTGTATCAAAAGTGCATGG
TATGGTAGAACTATCAAATAAAATGACAACTGATGCAATGAAAGTTGATACATCGATTGATCAAATAGCTATGGCTGTAA
AAGAAAATTCTTCAAGTATGCAAACGATAGCTGGTTCATCTGAGGAACAACATGCTTCTATGGAAGAGATAAATTCTTCA
GCGATACAATTAGCACAGATGGCGGAAGAACTTCAAGAGTTAATTGGTGGATTTAAGATTTAA

Upstream 100 bases:

>100_bases
GGTTTCATTTCGAATGGTACCATAAATGAATGTGGAAAAGTAAAGGAGAAAAATTTAAATAAACTATATAAGTAGTAAAA
ATGAAAAGGAGAAGTAGCTA

Downstream 100 bases:

>100_bases
GTTGAGATTCTAGGAGAGAATGCTAGAATCTTGTTACAGAGTGGAAATGAAAAACCTTATAACATAGTAAATAAGTATAA
TATGTACTCTCTATGCGTAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MFNIKERLGQIKLKTKLSMAFIAILIIPSLIVGVSSYNKSKTDLNETILQSAKDNISILDKIVDDELENKHIDITHFAKV
LTQGDYNPEQSQNVQNKFDQYIQLHPEIETIYTASSNNQFIHAPVGKIPEGFNPLESSWYKDAVKADGEIIVSSPYKSKS
TGNMVIAIAKQNADKSGVIGVDLNIKDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPSLKPGEKLDKTLVDELYKTEDGVI
TYSLNGEDRNISFKTNKKTGWKIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILFILKSIITPLRQLVISAQRIS
QGDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTSAGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQN
NEVESGAELIGEVTRNIQYVAENASEVSASSIYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLLDKKSQQIGSIL
EAIQNIAEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQADVHETVKAMNEVGVEVQSG
IKVANDTKQSFYEISKSANDIVSKVHGMVELSNKMTTDAMKVDTSIDQIAMAVKENSSSMQTIAGSSEEQHASMEEINSS
AIQLAQMAEELQELIGGFKI

Sequences:

>Translated_660_residues
MFNIKERLGQIKLKTKLSMAFIAILIIPSLIVGVSSYNKSKTDLNETILQSAKDNISILDKIVDDELENKHIDITHFAKV
LTQGDYNPEQSQNVQNKFDQYIQLHPEIETIYTASSNNQFIHAPVGKIPEGFNPLESSWYKDAVKADGEIIVSSPYKSKS
TGNMVIAIAKQNADKSGVIGVDLNIKDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPSLKPGEKLDKTLVDELYKTEDGVI
TYSLNGEDRNISFKTNKKTGWKIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILFILKSIITPLRQLVISAQRIS
QGDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTSAGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQN
NEVESGAELIGEVTRNIQYVAENASEVSASSIYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLLDKKSQQIGSIL
EAIQNIAEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQADVHETVKAMNEVGVEVQSG
IKVANDTKQSFYEISKSANDIVSKVHGMVELSNKMTTDAMKVDTSIDQIAMAVKENSSSMQTIAGSSEEQHASMEEINSS
AIQLAQMAEELQELIGGFKI
>Mature_660_residues
MFNIKERLGQIKLKTKLSMAFIAILIIPSLIVGVSSYNKSKTDLNETILQSAKDNISILDKIVDDELENKHIDITHFAKV
LTQGDYNPEQSQNVQNKFDQYIQLHPEIETIYTASSNNQFIHAPVGKIPEGFNPLESSWYKDAVKADGEIIVSSPYKSKS
TGNMVIAIAKQNADKSGVIGVDLNIKDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPSLKPGEKLDKTLVDELYKTEDGVI
TYSLNGEDRNISFKTNKKTGWKIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILFILKSIITPLRQLVISAQRIS
QGDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTSAGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQN
NEVESGAELIGEVTRNIQYVAENASEVSASSIYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLLDKKSQQIGSIL
EAIQNIAEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQADVHETVKAMNEVGVEVQSG
IKVANDTKQSFYEISKSANDIVSKVHGMVELSNKMTTDAMKVDTSIDQIAMAVKENSSSMQTIAGSSEEQHASMEEINSS
AIQLAQMAEELQELIGGFKI

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=273, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788195, Length=315, Percent_Identity=29.5238095238095, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1788194, Length=371, Percent_Identity=29.6495956873315, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1787690, Length=393, Percent_Identity=28.498727735369, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1789453, Length=366, Percent_Identity=25.6830601092896, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 72040; Mature: 72040

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIKERLGQIKLKTKLSMAFIAILIIPSLIVGVSSYNKSKTDLNETILQSAKDNISILD
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
KIVDDELENKHIDITHFAKVLTQGDYNPEQSQNVQNKFDQYIQLHPEIETIYTASSNNQF
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCE
IHAPVGKIPEGFNPLESSWYKDAVKADGEIIVSSPYKSKSTGNMVIAIAKQNADKSGVIG
EECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEE
VDLNIKDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPSLKPGEKLDKTLVDELYKTEDGVI
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
TYSLNGEDRNISFKTNKKTGWKIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILF
EEEECCCCCEEEEEECCCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ILKSIITPLRQLVISAQRISQGDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
AGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQNNEVESGAELIGEVTRNIQYV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AENASEVSASSIYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLLDKKSQQIGSIL
HHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EAIQNIAEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQ
HHHHHHHHHHCEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
ADVHETVKAMNEVGVEVQSGIKVANDTKQSFYEISKSANDIVSKVHGMVELSNKMTTDAM
HHHHHHHHHHHHHCCHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVDTSIDQIAMAVKENSSSMQTIAGSSEEQHASMEEINSSAIQLAQMAEELQELIGGFKI
HHCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFNIKERLGQIKLKTKLSMAFIAILIIPSLIVGVSSYNKSKTDLNETILQSAKDNISILD
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
KIVDDELENKHIDITHFAKVLTQGDYNPEQSQNVQNKFDQYIQLHPEIETIYTASSNNQF
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCE
IHAPVGKIPEGFNPLESSWYKDAVKADGEIIVSSPYKSKSTGNMVIAIAKQNADKSGVIG
EECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEE
VDLNIKDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPSLKPGEKLDKTLVDELYKTEDGVI
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
TYSLNGEDRNISFKTNKKTGWKIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILF
EEEECCCCCEEEEEECCCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ILKSIITPLRQLVISAQRISQGDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
AGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQNNEVESGAELIGEVTRNIQYV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AENASEVSASSIYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLLDKKSQQIGSIL
HHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EAIQNIAEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQ
HHHHHHHHHHCEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
ADVHETVKAMNEVGVEVQSGIKVANDTKQSFYEISKSANDIVSKVHGMVELSNKMTTDAM
HHHHHHHHHHHHHCCHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVDTSIDQIAMAVKENSSSMQTIAGSSEEQHASMEEINSSAIQLAQMAEELQELIGGFKI
HHCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA