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The map label for this gene is sigI [H]

Identifier: 218231054

GI number: 218231054

Start: 3312677

End: 3313396

Strand: Reverse

Name: sigI [H]

Synonym: BCB4264_A3433

Alternate gene names: 218231054

Gene position: 3313396-3312677 (Counterclockwise)

Preceding gene: 218231656

Following gene: 218232882

Centisome position: 61.14

GC content: 32.78

Gene sequence:

>720_bases
TTGAGTTTAGTAATGAAGATCTTAAGAAAACCGAAAATAGAAGATATCGTATGTAACATACAAAACAACGAAGAAGATAA
AGAAGCGTTTATCGTACAGTATCAGCCTTTTATTAGAAAATCAATCTCATCTGTCTGCCGCCGATATATTACAGAACAGG
ATGATGAATATAGCATTGGATTGTTTGCATTTAACGAAGCAATTGAACAGTATTCCTATACAAAAGGAAAATCCTTTTTA
GCGTTTGCTGATCTTCTTATAAAAAGAGATGTAATTGACTATATACGTAAGGAGTCTAAACATAACTTTGTCTTTTTAAA
AGAAGATGAGCAAGAGGAAATGTTAGAAATGCAAGTGTCGCTTACGGAGTATATGAAAGAGATGGAAAATAGTAACCGTA
AGGAGGAAATTCTTCATTTTCAAAGTGTGCTAGCTGAGTTTAAAATCACATTCTCAGAGCTTGCTAAAGAATCTCCTAAG
CATCGTGATACGCGTGAGCACTTAATAGAAATTGTAAAAATTATTATAAAAGAAGAGGAAATGATGGAAGAGCTGTTCCG
AAAGAAAAAGTTACCGCTTAAACATATTGAACCGCGTGTTAGAGTAAGTCGTAAAACGTTGGAACGACATAGAAAATACA
TTATTGCAATGTGTATTATTTTTGCAAACAACTATACATATATTCTGGATTACATAAGAGGGGAAAAGCATGATGAATAA

Upstream 100 bases:

>100_bases
AGAAAACAAGACCGAAGAAAAGTACCAAGAAAATCTGGTTAAATGGTCACTTTTGTAGTGGCCATTTTGCTATTTGAAGG
AGGCTGGGAGATTACAAGTG

Downstream 100 bases:

>100_bases
AGGAATTGTGATGGATATAAAAAAGCATAGCGTAGTTGTTTTAACACCAAATGGAGAGTTTATTACGTGTAAAAGAAAAG
GGGATTCTTGCATGATCGGG

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYTKGKSFL
AFADLLIKRDVIDYIRKESKHNFVFLKEDEQEEMLEMQVSLTEYMKEMENSNRKEEILHFQSVLAEFKITFSELAKESPK
HRDTREHLIEIVKIIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGEKHDE

Sequences:

>Translated_239_residues
MSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYTKGKSFL
AFADLLIKRDVIDYIRKESKHNFVFLKEDEQEEMLEMQVSLTEYMKEMENSNRKEEILHFQSVLAEFKITFSELAKESPK
HRDTREHLIEIVKIIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGEKHDE
>Mature_238_residues
SLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYTKGKSFLA
FADLLIKRDVIDYIRKESKHNFVFLKEDEQEEMLEMQVSLTEYMKEMENSNRKEEILHFQSVLAEFKITFSELAKESPKH
RDTREHLIEIVKIIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGEKHDE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28865; Mature: 28734

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIG
CHHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEH
LFAFNEAIEQYSYTKGKSFLAFADLLIKRDVIDYIRKESKHNFVFLKEDEQEEMLEMQVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
LTEYMKEMENSNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEIVKIIIKEEE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGEKHDE
HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIG
HHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEH
LFAFNEAIEQYSYTKGKSFLAFADLLIKRDVIDYIRKESKHNFVFLKEDEQEEMLEMQVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
LTEYMKEMENSNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEIVKIIIKEEE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGEKHDE
HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]