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The map label for this gene is rpe [H]

Identifier: 218230927

GI number: 218230927

Start: 3880301

End: 3880945

Strand: Reverse

Name: rpe [H]

Synonym: BCB4264_A3959

Alternate gene names: 218230927

Gene position: 3880945-3880301 (Counterclockwise)

Preceding gene: 218232949

Following gene: 218235867

Centisome position: 71.62

GC content: 38.91

Gene sequence:

>645_bases
ATGATTAAAATTGCACCATCGATTTTATCAGCAGATTTTTCAAAATTAGGGGAAGAGATTAAAGATGTAGAAAAGGGCGG
AGCGGATTACATTCACGTTGACGTAATGGATGGACATTTCGTACCAAATATTACGATTGGACCGTTAATTGTAGAAGCAA
TCCGTCCGATTACATCATTACCATTAGATGTACATTTAATGATTGAAAATCCTGATAACTATATCCCGACTTTCGCACAA
GCGGGAGCGGATATTATTACTGTTCACGTAGAGGCGTGTCCGCATCTACATCGTACAATTCAGTTAATTAAATCTCATGG
TATTAAAGCGGGCGTTGTATTAAATCCACATACGCCAGTTTCAGTGATTGAGCATGTATTAGAAGATATAGATATGGTAT
TACTTATGACAGTAAACCCTGGATTTGGTGGACAGAAGTTTATCCATTCTGTATTACCGAAAATTAAACAAGTTGCAGAC
ATGGTGAAAGAGCGCAATCTAGAAGTGGAAATTGAAGTTGATGGTGGTGTAAATGCTGAAACAGCAAGACTTTGTGTGGA
AGCAGGAGCAAATGTACTTGTAGCTGGGTCAGCAGTATACAATCAAAAAGACCGCGGTGAAGCAATTCGCGTAATTCGTG
GGTAG

Upstream 100 bases:

>100_bases
TGAAAGCTGCGGTTGAAGAAGGGAAGATTACAGAATATCGCTATAAGAACTATAAACAATTCGTAGAAGAAATTAGAGAG
AGAAAGCCGAGGTATTAGTT

Downstream 100 bases:

>100_bases
TGATGAACTTTTATCCTAGTAAGGCATTTATAGGATAGGATAAAAATATGTAAAAAGGCAATCTACCGAATGGCAGATTG
CCTTTTTACAATGGAAGGAG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MIKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSLPLDVHLMIENPDNYIPTFAQ
AGADIITVHVEACPHLHRTIQLIKSHGIKAGVVLNPHTPVSVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVAD
MVKERNLEVEIEVDGGVNAETARLCVEAGANVLVAGSAVYNQKDRGEAIRVIRG

Sequences:

>Translated_214_residues
MIKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSLPLDVHLMIENPDNYIPTFAQ
AGADIITVHVEACPHLHRTIQLIKSHGIKAGVVLNPHTPVSVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVAD
MVKERNLEVEIEVDGGVNAETARLCVEAGANVLVAGSAVYNQKDRGEAIRVIRG
>Mature_214_residues
MIKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSLPLDVHLMIENPDNYIPTFAQ
AGADIITVHVEACPHLHRTIQLIKSHGIKAGVVLNPHTPVSVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVAD
MVKERNLEVEIEVDGGVNAETARLCVEAGANVLVAGSAVYNQKDRGEAIRVIRG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=42.2535211267606, Blast_Score=174, Evalue=5e-44,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=40.3755868544601, Blast_Score=165, Evalue=3e-41,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.9285714285714, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1789788, Length=211, Percent_Identity=48.8151658767773, Blast_Score=217, Evalue=5e-58,
Organism=Escherichia coli, GI1790523, Length=214, Percent_Identity=40.6542056074766, Blast_Score=176, Evalue=9e-46,
Organism=Escherichia coli, GI1790754, Length=199, Percent_Identity=31.1557788944724, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=218, Percent_Identity=39.4495412844037, Blast_Score=159, Evalue=9e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=223, Percent_Identity=42.152466367713, Blast_Score=181, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=41.9811320754717, Blast_Score=177, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23165; Mature: 23165

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSL
CEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
PLDVHLMIENPDNYIPTFAQAGADIITVHVEACPHLHRTIQLIKSHGIKAGVVLNPHTPV
CEEEEEEEECCCCCCCCHHHCCCEEEEEEEHHCHHHHHHHHHHHHCCCEEEEEECCCCCH
SVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVADMVKERNLEVEIEVDGGVNAE
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
TARLCVEAGANVLVAGSAVYNQKDRGEAIRVIRG
HHHHHHHCCCCEEEECHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MIKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSL
CEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
PLDVHLMIENPDNYIPTFAQAGADIITVHVEACPHLHRTIQLIKSHGIKAGVVLNPHTPV
CEEEEEEEECCCCCCCCHHHCCCEEEEEEEHHCHHHHHHHHHHHHCCCEEEEEECCCCCH
SVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVADMVKERNLEVEIEVDGGVNAE
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
TARLCVEAGANVLVAGSAVYNQKDRGEAIRVIRG
HHHHHHHCCCCEEEECHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]