Click here to switch to the map view.

The map label for this gene is 218230792

Identifier: 218230792

GI number: 218230792

Start: 1676040

End: 1676606

Strand: Direct

Name: 218230792

Synonym: BCB4264_A1768

Alternate gene names: NA

Gene position: 1676040-1676606 (Clockwise)

Preceding gene: 218232314

Following gene: 218236152

Centisome position: 30.93

GC content: 34.04

Gene sequence:

>567_bases
ATGAAATCAAATGAGAAAAATTTTATAAAAAGATTACAGCGGCAAAAAGAAGACGCGTTAGAATTTGTTGTCGATACATA
CTTACCACTCATAAAGGGGATCACGCATAAAGTTCTACTCCCAATTCAAAATGATGGACTCATAGAGGAATGTATAAACG
ATATATTTCTTTCCATTTGGAATAACGCAAATAAATTTCATGGAGAGCCGAGTGATTTTAAAAAGTGGATTGCAGCGATT
GCGAAGTTTAAAGCAATTGATTATTACCGGAAATCGACTAAAACAGTAGAAATCATTTCAGATGAGTTTCATATCAGTAC
AGAAAAATCAGCAGAAGACGAATTAATCGTTATGGAAGATAGGGAAGAATTATTGAAGCTCATTAATCAATTAGAACCGC
TAGATCAAAAGGTGTTCATTATGAAATATTTACTTGGTATGAAGACAGAGGAAATAGGTGGCAAGTTAGGATTAACTCGG
ACAGCAATTGATAATCGAGTGTACCGGGGGAAAAAGAAACTACAACAAAATGCTACGAATATTAGTTTTGGAGGTAGTGC
AATATGA

Upstream 100 bases:

>100_bases
TTCCATTACATATAAAAAATAAAAAAGATGAGAGAAAAAATTTTCTCAGACGTTATATAGGATGTAAAAGCTTTTACAAA
ACAATAAGGGGAATCGCTAC

Downstream 100 bases:

>100_bases
AAGACATTTATGAACTATTAAATGATATTGATATAGACGAAAAAGAACTAGAAGAAATTGAGGCTTCTGAAATTGAAAAG
GAAAAAGTAAAACGAAATGT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKSNEKNFIKRLQRQKEDALEFVVDTYLPLIKGITHKVLLPIQNDGLIEECINDIFLSIWNNANKFHGEPSDFKKWIAAI
AKFKAIDYYRKSTKTVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGGKLGLTR
TAIDNRVYRGKKKLQQNATNISFGGSAI

Sequences:

>Translated_188_residues
MKSNEKNFIKRLQRQKEDALEFVVDTYLPLIKGITHKVLLPIQNDGLIEECINDIFLSIWNNANKFHGEPSDFKKWIAAI
AKFKAIDYYRKSTKTVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGGKLGLTR
TAIDNRVYRGKKKLQQNATNISFGGSAI
>Mature_188_residues
MKSNEKNFIKRLQRQKEDALEFVVDTYLPLIKGITHKVLLPIQNDGLIEECINDIFLSIWNNANKFHGEPSDFKKWIAAI
AKFKAIDYYRKSTKTVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGGKLGLTR
TAIDNRVYRGKKKLQQNATNISFGGSAI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21680; Mature: 21680

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNEKNFIKRLQRQKEDALEFVVDTYLPLIKGITHKVLLPIQNDGLIEECINDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH
NNANKFHGEPSDFKKWIAAIAKFKAIDYYRKSTKTVEIISDEFHISTEKSAEDELIVMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCCEEEECC
REELLKLINQLEPLDQKVFIMKYLLGMKTEEIGGKLGLTRTAIDNRVYRGKKKLQQNATN
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
ISFGGSAI
CCCCCCCC
>Mature Secondary Structure
MKSNEKNFIKRLQRQKEDALEFVVDTYLPLIKGITHKVLLPIQNDGLIEECINDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH
NNANKFHGEPSDFKKWIAAIAKFKAIDYYRKSTKTVEIISDEFHISTEKSAEDELIVMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCCEEEECC
REELLKLINQLEPLDQKVFIMKYLLGMKTEEIGGKLGLTRTAIDNRVYRGKKKLQQNATN
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
ISFGGSAI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA