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The map label for this gene is yhdI [H]

Identifier: 218230784

GI number: 218230784

Start: 1980022

End: 1981437

Strand: Reverse

Name: yhdI [H]

Synonym: BCB4264_A2075

Alternate gene names: 218230784

Gene position: 1981437-1980022 (Counterclockwise)

Preceding gene: 218233884

Following gene: 218235933

Centisome position: 36.56

GC content: 35.1

Gene sequence:

>1416_bases
ATGGATTTTACTATCCCATTGCAATTACAAAGTAACACACCTATTTACTTGCAAATTTACGAATATATAAAAGCTGAAAT
TATACAAGGGACTATTTCTGTTGGCACACGTCTACCCTCACACAGAAATTTAGCATCACAACTTAATATTAGCCGCATTA
CTGTTGAATCAGCTTATCAACAGTTATTAGCTGAAGGTTATGCAGAAAGTAAACCGAAACGTGGTATTTTTGTAGCAAAT
TTCGATATTGACGTTATCCCAAATAAAAAACGAAATGCAGCAAAGAAGACGAACAATTTGATAGAAGAAAAATTTGAATA
TGATTGTAGCCAAGGGCTTATTGATCAAAATGCATTTCCGATTACAAATTGGAAACGAGCATTACAAGAATCCATACTTA
CATACGAAAATGCACTATTTGCCAAAGAAGACCCTCAAGGTGAATTCGCTCTTCGAGAGCATATATCAACATATTTATAT
CATTCTCGCGGTGTACATTCTTCACCTAATCAAATTGTTATTGGCGCCGGAACACAGCCACTTCTCTGGCTACTACTTCA
ACTGCTTGGCCCTACAAAAGAATACGGCATTGAAAACCCTGGATTTCACCGTATACACGCAATTATTAAAAGCTGTGATA
GACAAATTCATCCCATACCATTGGATGAAAAAGGGATTGATATTTCTAGTTTATACAATACAAATTCCAATGTCTCCTAC
GTTACACCATCACACCAATTTCCACTCGGGATTATTATGCCTTTATCTAGAAGATTAGAATTGTTAAAGTGGGCTAATGA
TTGCAATGGATACATTATTGAAGATGACTATGACGGAGAGTTTCGCTACGCAGGTAAGCCGATTCCTTCTTTACAAAGTC
TTGACTCAAATGAACGCGTTATTTATATGGGGACTTTCTCAAAATCTTTTTTACCTTCTTTACGAATGGGATATGTTGTT
TTACCACCACATCTTTTAAAAACATATCAAGAACTGCATGGAATTTTCAAACAAACAGTCTCTACAATACAACAACTTGC
TTTTGCTAACTTTATACAAAACGGGAATTGGGAACGTCACCTTAATCGGAGTCGTACACTATATAAAAGAAAACATCATA
CGTTAGTAAAATCCATTACGAAAGAAATGGGGGCTAATGTTCAAATTCTTGGTGAACAGTCCGGACTTCATATTGTTTTA
TGTGTAAATAACAGTATGAATGAAAATGAACTGATTGAATCCGCTAAAAAACAAAGCGTTAAATTATACCCACTTTCTCC
ATATGATTTCGTGAATGATTTACGTAAGGAATCATACGTATTACTCGGCTTTGGTAGTATTCCGGAAAATAAAATTGAAA
CGTTGGCTATATTATTGAAAGACGCTTGGTTTCCTAGTTGCAAGGAAACTTGTTAA

Upstream 100 bases:

>100_bases
TTTTCTAAATGTTATATCATTATTATAGAAAGCAACTGCCCTTTACTTAAGTGGCAGTTTAAGTGTTTTTTATAAGGCCA
GTTTTAAAGGAGAGTTTTAT

Downstream 100 bases:

>100_bases
CATTGGGTTTAACTTGTAACATGTTAACAATTCAACAAAATAAAAAAGAAGGCTGTTCCAAAATAACTTTTTGGACAGCC
TTCTTCTAGTTATTCACCTG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MDFTIPLQLQSNTPIYLQIYEYIKAEIIQGTISVGTRLPSHRNLASQLNISRITVESAYQQLLAEGYAESKPKRGIFVAN
FDIDVIPNKKRNAAKKTNNLIEEKFEYDCSQGLIDQNAFPITNWKRALQESILTYENALFAKEDPQGEFALREHISTYLY
HSRGVHSSPNQIVIGAGTQPLLWLLLQLLGPTKEYGIENPGFHRIHAIIKSCDRQIHPIPLDEKGIDISSLYNTNSNVSY
VTPSHQFPLGIIMPLSRRLELLKWANDCNGYIIEDDYDGEFRYAGKPIPSLQSLDSNERVIYMGTFSKSFLPSLRMGYVV
LPPHLLKTYQELHGIFKQTVSTIQQLAFANFIQNGNWERHLNRSRTLYKRKHHTLVKSITKEMGANVQILGEQSGLHIVL
CVNNSMNENELIESAKKQSVKLYPLSPYDFVNDLRKESYVLLGFGSIPENKIETLAILLKDAWFPSCKETC

Sequences:

>Translated_471_residues
MDFTIPLQLQSNTPIYLQIYEYIKAEIIQGTISVGTRLPSHRNLASQLNISRITVESAYQQLLAEGYAESKPKRGIFVAN
FDIDVIPNKKRNAAKKTNNLIEEKFEYDCSQGLIDQNAFPITNWKRALQESILTYENALFAKEDPQGEFALREHISTYLY
HSRGVHSSPNQIVIGAGTQPLLWLLLQLLGPTKEYGIENPGFHRIHAIIKSCDRQIHPIPLDEKGIDISSLYNTNSNVSY
VTPSHQFPLGIIMPLSRRLELLKWANDCNGYIIEDDYDGEFRYAGKPIPSLQSLDSNERVIYMGTFSKSFLPSLRMGYVV
LPPHLLKTYQELHGIFKQTVSTIQQLAFANFIQNGNWERHLNRSRTLYKRKHHTLVKSITKEMGANVQILGEQSGLHIVL
CVNNSMNENELIESAKKQSVKLYPLSPYDFVNDLRKESYVLLGFGSIPENKIETLAILLKDAWFPSCKETC
>Mature_471_residues
MDFTIPLQLQSNTPIYLQIYEYIKAEIIQGTISVGTRLPSHRNLASQLNISRITVESAYQQLLAEGYAESKPKRGIFVAN
FDIDVIPNKKRNAAKKTNNLIEEKFEYDCSQGLIDQNAFPITNWKRALQESILTYENALFAKEDPQGEFALREHISTYLY
HSRGVHSSPNQIVIGAGTQPLLWLLLQLLGPTKEYGIENPGFHRIHAIIKSCDRQIHPIPLDEKGIDISSLYNTNSNVSY
VTPSHQFPLGIIMPLSRRLELLKWANDCNGYIIEDDYDGEFRYAGKPIPSLQSLDSNERVIYMGTFSKSFLPSLRMGYVV
LPPHLLKTYQELHGIFKQTVSTIQQLAFANFIQNGNWERHLNRSRTLYKRKHHTLVKSITKEMGANVQILGEQSGLHIVL
CVNNSMNENELIESAKKQSVKLYPLSPYDFVNDLRKESYVLLGFGSIPENKIETLAILLKDAWFPSCKETC

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=428, Percent_Identity=26.4018691588785, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1790797, Length=379, Percent_Identity=24.802110817942, Blast_Score=102, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53680; Mature: 53680

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTIPLQLQSNTPIYLQIYEYIKAEIIQGTISVGTRLPSHRNLASQLNISRITVESAYQ
CCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEEEHHHHHH
QLLAEGYAESKPKRGIFVANFDIDVIPNKKRNAAKKTNNLIEEKFEYDCSQGLIDQNAFP
HHHHHHHHCCCCCCCEEEEECEEEECCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCC
ITNWKRALQESILTYENALFAKEDPQGEFALREHISTYLYHSRGVHSSPNQIVIGAGTQP
CHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
LLWLLLQLLGPTKEYGIENPGFHRIHAIIKSCDRQIHPIPLDEKGIDISSLYNTNSNVSY
HHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCEEE
VTPSHQFPLGIIMPLSRRLELLKWANDCNGYIIEDDYDGEFRYAGKPIPSLQSLDSNERV
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCHHCCCCCCEE
IYMGTFSKSFLPSLRMGYVVLPPHLLKTYQELHGIFKQTVSTIQQLAFANFIQNGNWERH
EEEECCCHHHCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LNRSRTLYKRKHHTLVKSITKEMGANVQILGEQSGLHIVLCVNNSMNENELIESAKKQSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KLYPLSPYDFVNDLRKESYVLLGFGSIPENKIETLAILLKDAWFPSCKETC
EEEECCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDFTIPLQLQSNTPIYLQIYEYIKAEIIQGTISVGTRLPSHRNLASQLNISRITVESAYQ
CCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEEEHHHHHH
QLLAEGYAESKPKRGIFVANFDIDVIPNKKRNAAKKTNNLIEEKFEYDCSQGLIDQNAFP
HHHHHHHHCCCCCCCEEEEECEEEECCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCC
ITNWKRALQESILTYENALFAKEDPQGEFALREHISTYLYHSRGVHSSPNQIVIGAGTQP
CHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
LLWLLLQLLGPTKEYGIENPGFHRIHAIIKSCDRQIHPIPLDEKGIDISSLYNTNSNVSY
HHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCEEE
VTPSHQFPLGIIMPLSRRLELLKWANDCNGYIIEDDYDGEFRYAGKPIPSLQSLDSNERV
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCHHCCCCCCEE
IYMGTFSKSFLPSLRMGYVVLPPHLLKTYQELHGIFKQTVSTIQQLAFANFIQNGNWERH
EEEECCCHHHCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LNRSRTLYKRKHHTLVKSITKEMGANVQILGEQSGLHIVLCVNNSMNENELIESAKKQSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KLYPLSPYDFVNDLRKESYVLLGFGSIPENKIETLAILLKDAWFPSCKETC
EEEECCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]