Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 21674907

GI number: 21674907

Start: 1989446

End: 1990207

Strand: Direct

Name: recO [H]

Synonym: CT2098

Alternate gene names: 21674907

Gene position: 1989446-1990207 (Clockwise)

Preceding gene: 21674905

Following gene: 21674908

Centisome position: 92.32

GC content: 64.96

Gene sequence:

>762_bases
GTGGTGCTCCGCGACATCAAGTATCGTGACCAGTCCAAGATCTGCCTGCTGCTGACGCGGGAGTACGGACAGGTGTCGGT
AATCCTGAAAGGCGGACGCAGCGCAAAAAGCCGCATCGGCCCGCTCTTCTCGCCGGGCAACGTGATCGACGCCGTGCTCT
ACAAAAAAGGCAACCGCGACATCCAGTTCCTGAGCGACGCCAGCCTCGTGCTCAGTCCGCTCTCCGAATCGCCTGACCTC
GACCGCTTCGGCGTACTCTACCGGGTGCTCGACCTCATCCGCTACGCCTCGACGCACGAGGAGAAGAACGTGCCGCTCTT
CACCATCACGCACTCGGCCATCTGGCGGCTCTGCCACGCGGAGCGCAACTTCCAGACGATTCTCGCCTGGTTCCTGTTGC
GCCTCGTCGGCGTGCTCGGTTTCGCGCCGTCGCTCGACCGCTGCGTCTTCAGCAACGCCGACCTCGCGAGCAGCATCGAG
GAGATGAAGCTCGACGAGCTGCTTTTCGTGCACGACCCCGGCGGCTTCGCCCTGCCCGGCAGCGCCGTGACGATGGGCGC
GGCCATCCAGACGGTGCCGGTCAACCGCTACCATTTTATCCGCAACCTCGCCGCCACCGGCGGCAACGCGCCATGCCCGG
CAGCGCCGGCAGACGACATTGCAGCGGTCACGGCGCTCTTGCAGGAGTACTGCGCCCGCCACCTCGACCGGATGCCACAC
CGCAAGCACCTCGACATTGTCTCGCGCCTGATTTCCGCATGA

Upstream 100 bases:

>100_bases
GGTATCTTCGGGTCGTGAAAACCCTGTAATATTGGACTCTGTATATAAGTATATTTAATGTCAAAAAAAAGTTTCACCGG
TGATCGTAAAAACCCGGGCG

Downstream 100 bases:

>100_bases
ACGGCGCGACATGCGGCATGCCTGTTTTCAATCTTCGGGACTATTTTCTATCTTGACCAGTCATTTAAAGCCATAACCCT
CGACTAATTCAAACCGAACG

Product: recombination/replication protein RecO, putative

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRDIQFLSDASLVLSPLSESPDL
DRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHAERNFQTILAWFLLRLVGVLGFAPSLDRCVFSNADLASSIE
EMKLDELLFVHDPGGFALPGSAVTMGAAIQTVPVNRYHFIRNLAATGGNAPCPAAPADDIAAVTALLQEYCARHLDRMPH
RKHLDIVSRLISA

Sequences:

>Translated_253_residues
MVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRDIQFLSDASLVLSPLSESPDL
DRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHAERNFQTILAWFLLRLVGVLGFAPSLDRCVFSNADLASSIE
EMKLDELLFVHDPGGFALPGSAVTMGAAIQTVPVNRYHFIRNLAATGGNAPCPAAPADDIAAVTALLQEYCARHLDRMPH
RKHLDIVSRLISA
>Mature_253_residues
MVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRDIQFLSDASLVLSPLSESPDL
DRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHAERNFQTILAWFLLRLVGVLGFAPSLDRCVFSNADLASSIE
EMKLDELLFVHDPGGFALPGSAVTMGAAIQTVPVNRYHFIRNLAATGGNAPCPAAPADDIAAVTALLQEYCARHLDRMPH
RKHLDIVSRLISA

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27998; Mature: 27998

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRD
CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCC
IQFLSDASLVLSPLSESPDLDRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHA
EEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHC
ERNFQTILAWFLLRLVGVLGFAPSLDRCVFSNADLASSIEEMKLDELLFVHDPGGFALPG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCCCCC
SAVTMGAAIQTVPVNRYHFIRNLAATGGNAPCPAAPADDIAAVTALLQEYCARHLDRMPH
CHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RKHLDIVSRLISA
HHHHHHHHHHHCC
>Mature Secondary Structure
MVLRDIKYRDQSKICLLLTREYGQVSVILKGGRSAKSRIGPLFSPGNVIDAVLYKKGNRD
CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCC
IQFLSDASLVLSPLSESPDLDRFGVLYRVLDLIRYASTHEEKNVPLFTITHSAIWRLCHA
EEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHC
ERNFQTILAWFLLRLVGVLGFAPSLDRCVFSNADLASSIEEMKLDELLFVHDPGGFALPG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCCCCC
SAVTMGAAIQTVPVNRYHFIRNLAATGGNAPCPAAPADDIAAVTALLQEYCARHLDRMPH
CHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RKHLDIVSRLISA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA