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The map label for this gene is ssb-1

Identifier: 21674759

GI number: 21674759

Start: 1838992

End: 1839480

Strand: Direct

Name: ssb-1

Synonym: CT1947

Alternate gene names: 21674759

Gene position: 1838992-1839480 (Clockwise)

Preceding gene: 21674758

Following gene: 21674760

Centisome position: 85.34

GC content: 55.62

Gene sequence:

>489_bases
ATGGCAAGAGGCTTGAACAAAGTAATGCTGATCGGTCACCTTGGTAACGATCCTGAACGCCGCGAAACCGCATCGGGCCA
GTCCGTCGTCAATTTCACCCTTGCAACCAGCGAGGGCTTCAAGGACAGCAGTGGCAACCTCCAGGAGCGCACCGAATGGC
ACCGGATCGTCGCGTGGGGAAAGCTGGCCGACATTTGCAGCCAGTACCTCAAGAAAGGACGTCAGGTTTATATCGAAGGG
CGCTTGCAAACGCGCTCATGGGATGACAACAAGACTGGTGACAAGAAATACGCGACGGAAATCGTGTGCACCGATATGCA
GATGCTCGGAGCAAAAGATTCCGGCGGCGGCACGAGCGACGCTTCTTATTCGCAGAATCGCCCATCTTACTCGCGTCCGT
CGAGGCCGGAACCATCTTCCGGCAATTACGGCGCAAGCCCATCATCTGGCGGAGCACAGGAGTTTGAAAAAGACGACTTG
CCTTTCTGA

Upstream 100 bases:

>100_bases
CAACCGATTCACCACCTGACTTGAACAATAACAAATAATCATGTAGCTTGTTGTGGGCGAAACCAACAACAAGAAAATTG
CATAAATCCCGCACCATACT

Downstream 100 bases:

>100_bases
CCAGAATTTCCGGCACTGACCCCGCATGGCTGACCTGAAAAAACAGATTGCCTCAGGCAAAATCGCCCCTGTCTATTTTT
TTCAGGGTCCGGAAAGCTGG

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MARGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWGKLADICSQYLKKGRQVYIEG
RLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSDASYSQNRPSYSRPSRPEPSSGNYGASPSSGGAQEFEKDDL
PF

Sequences:

>Translated_162_residues
MARGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWGKLADICSQYLKKGRQVYIEG
RLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSDASYSQNRPSYSRPSRPEPSSGNYGASPSSGGAQEFEKDDL
PF
>Mature_161_residues
ARGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWGKLADICSQYLKKGRQVYIEGR
LQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSDASYSQNRPSYSRPSRPEPSSGNYGASPSSGGAQEFEKDDLP
F

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Homo sapiens, GI4507231, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1790494, Length=189, Percent_Identity=40.2116402116402, Blast_Score=133, Evalue=5e-33,
Organism=Drosophila melanogaster, GI85725234, Length=107, Percent_Identity=31.7757009345794, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24647376, Length=107, Percent_Identity=31.7757009345794, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB1_CHLTE (Q8KB47)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_662824.1
- ProteinModelPortal:   Q8KB47
- SMR:   Q8KB47
- GeneID:   1008252
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT1947
- NMPDR:   fig|194439.1.peg.1918
- TIGR:   CT1947
- HOGENOM:   HBG755544
- OMA:   DESRTSQ
- ProtClustDB:   CLSK638014
- BioCyc:   CTEP194439:CT_1947-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 17805; Mature: 17674

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWG
CCCCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
KLADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSD
HHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
ASYSQNRPSYSRPSRPEPSSGNYGASPSSGGAQEFEKDDLPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
ARGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWG
CCCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
KLADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSD
HHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
ASYSQNRPSYSRPSRPEPSSGNYGASPSSGGAQEFEKDDLPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901