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The map label for this gene is ycjD [C]

Identifier: 21674691

GI number: 21674691

Start: 1778396

End: 1778977

Strand: Reverse

Name: ycjD [C]

Synonym: CT1879

Alternate gene names: 21674691

Gene position: 1778977-1778396 (Counterclockwise)

Preceding gene: 21674692

Following gene: 21674690

Centisome position: 82.55

GC content: 49.48

Gene sequence:

>582_bases
ATGCGTAAAACCCAAACCTACAAATCCTTACCCTATAACCCTGCTTTAAGGGATAGGGCAAAAGCCTTACGTAAAGCGGG
TATATTGCACGAAGCCTTACTTTGGTTTGAGTTGAAAAGTAATAAGCTCAATGGACTGGATTTTGACCGACAAAAAATCA
TCGGCAACTACATCGTAGATTTTTACTGTGCTGAAAGATCCGTTGTCATCGAAGTGGATGGTAGTTCGCACGACAGTAAA
CAGATTGAGGATAGGGAGAGGGATGCGTATTTAAATGGTCTGGGGCTAACGGTGATTCGGGTATTGGCAAAAGATGTTTT
GCGGAATTTGGAAGGGGTTGTTGAGTTTTTGAAGGACCACCCCGCCCTGACGGGCACCCCTCCAGAGGAGGGGAATAAAA
CTGCCCTGACGGGCACCCCTCCAGAGGAGGGGAATAAAACTGCCCTGACGGGCACCCCTCCAGAGGAGGGGAATAAAACT
GCCCTGACGGGCACCCCTCCAGAGGAGGGGAATAAAACTGCCCTGACGGGCACCCCTCCAGAGGAGGGGAATAAAACCAC
TCTCACAGAAGCAAGGGAATAA

Upstream 100 bases:

>100_bases
CTGCTGTTCAGCTTCCCCAAAGCATCTTTTGGAGGGGTGCCCGAAGGGCGGGATCAATTCCCCTCCTTTGGAGGGGTGCC
CGAAGGGCGGGGTGGTCTCA

Downstream 100 bases:

>100_bases
TGAAGGAATGGTGTCTCGTATGACTGACTACAAAACCATCGCCGAATCGAACAACTTCATTGTCCTCGACCGCTACATGC
CCGATTGGAGGGTGGCGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRKTQTYKSLPYNPALRDRAKALRKAGILHEALLWFELKSNKLNGLDFDRQKIIGNYIVDFYCAERSVVIEVDGSSHDSK
QIEDRERDAYLNGLGLTVIRVLAKDVLRNLEGVVEFLKDHPALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKT
ALTGTPPEEGNKTALTGTPPEEGNKTTLTEARE

Sequences:

>Translated_193_residues
MRKTQTYKSLPYNPALRDRAKALRKAGILHEALLWFELKSNKLNGLDFDRQKIIGNYIVDFYCAERSVVIEVDGSSHDSK
QIEDRERDAYLNGLGLTVIRVLAKDVLRNLEGVVEFLKDHPALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKT
ALTGTPPEEGNKTALTGTPPEEGNKTTLTEARE
>Mature_193_residues
MRKTQTYKSLPYNPALRDRAKALRKAGILHEALLWFELKSNKLNGLDFDRQKIIGNYIVDFYCAERSVVIEVDGSSHDSK
QIEDRERDAYLNGLGLTVIRVLAKDVLRNLEGVVEFLKDHPALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKT
ALTGTPPEEGNKTALTGTPPEEGNKTTLTEARE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=100, Percent_Identity=36, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 21214; Mature: 21214

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTQTYKSLPYNPALRDRAKALRKAGILHEALLWFELKSNKLNGLDFDRQKIIGNYIVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHH
FYCAERSVVIEVDGSSHDSKQIEDRERDAYLNGLGLTVIRVLAKDVLRNLEGVVEFLKDH
EEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKTALTGTPP
CCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCEEEECCCCC
EEGNKTTLTEARE
CCCCCCCCCCCCC
>Mature Secondary Structure
MRKTQTYKSLPYNPALRDRAKALRKAGILHEALLWFELKSNKLNGLDFDRQKIIGNYIVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHH
FYCAERSVVIEVDGSSHDSKQIEDRERDAYLNGLGLTVIRVLAKDVLRNLEGVVEFLKDH
EEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKTALTGTPPEEGNKTALTGTPP
CCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCEEEECCCCC
EEGNKTTLTEARE
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]