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The map label for this gene is yggS [C]

Identifier: 21674628

GI number: 21674628

Start: 1718239

End: 1718928

Strand: Direct

Name: yggS [C]

Synonym: CT1814

Alternate gene names: 21674628

Gene position: 1718239-1718928 (Clockwise)

Preceding gene: 21674627

Following gene: 21674629

Centisome position: 79.73

GC content: 61.3

Gene sequence:

>690_bases
ATGGAAAGCATCTCATCGAACCTCACCGCCGTCAGGGAACAGATCGCCGAGGCCTGCCGCAAGGCGGGCCGCCGCGAGGA
TGAGGTAACGCTCATCGCTGTCTCTAAAACCAAAAGCGCCGCAGCCATACGCGAGGCGTGGGATGCGGGCCAGCGGGAGT
TCGGCGAGAGTTACGTGCAGGAGTTTCTGGAAAAGGTTGAAGCACCCGAACTCTCGGGCCTGCCGGTTTCGTGGCACTTC
ATCGGCCACCTCCAGTCCAACAAGGTTCGTCAGATCGTCGACAAGGTGACGATGGTGCATGGCATCGACAAGGTTTCAAC
TGCCAAAGAGCTGTCGAAACGCGCCGGGCAGCACGATCTGACGGTCGATTACCTGCTTGAGGTGAACGTGTCGCGCGAAA
GCACGAAGTACGGCTTCAGCCCCGACTCGGTGTTGCAGGCCGCCGAAGAGTGCTTCGCTCTGCCGAACGTGCGCCTGCGC
GGACTGATGACCATCGCCTCGCCCGCCCCCTCCGAAGCCCGCCGCGAATTTGCGGAGCTTCGTCAGACACTCGACAAGCT
CCGCCAGAACGCGCCTGAGCCGTCGCTTCTTACCGAGCTATCAATGGGCATGAGCGGCGATTTCGAGGAAGCCATCCTCG
AAGGCGCCACCATGATCCGCATCGGCACCGCCATCTTCGGATGGCGATAA

Upstream 100 bases:

>100_bases
TTGACGCCATCGCCGCCGTCGAGACCGACATGCGCGACAACCCGCTCAAGCCGGTGACCATCGAAACCATCACTCCTGCA
ACCGCCTGATCGCCGAAAAC

Downstream 100 bases:

>100_bases
ATGGATAATCTTGTTGCATTATCCACTGTCAACTGTCAATGATCAACGCCTCCCCGCCTTTCATCTCTCCCCGTCGCTAC
TTATATTTAATGTCTTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MESISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEFLEKVEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTVDYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLR
GLMTIASPAPSEARREFAELRQTLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR

Sequences:

>Translated_229_residues
MESISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEFLEKVEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTVDYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLR
GLMTIASPAPSEARREFAELRQTLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR
>Mature_229_residues
MESISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEFLEKVEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTVDYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLR
GLMTIASPAPSEARREFAELRQTLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=242, Percent_Identity=37.603305785124, Blast_Score=132, Evalue=2e-31,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=44.017094017094, Blast_Score=172, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17533025, Length=242, Percent_Identity=35.5371900826446, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=239, Percent_Identity=35.9832635983264, Blast_Score=114, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45550861, Length=252, Percent_Identity=35.3174603174603, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25395; Mature: 25395

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
EFLEKVEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDL
HHHHHHCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
TVDYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLRGLMTIASPAPSEARREFAEL
EEEHHEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHH
RQTLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR
HHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCC
>Mature Secondary Structure
MESISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
EFLEKVEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDL
HHHHHHCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
TVDYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLRGLMTIASPAPSEARREFAEL
EEEHHEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHH
RQTLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR
HHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]