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The map label for this gene is hypD [H]

Identifier: 21674608

GI number: 21674608

Start: 1698868

End: 1699962

Strand: Reverse

Name: hypD [H]

Synonym: CT1794

Alternate gene names: 21674608

Gene position: 1699962-1698868 (Counterclockwise)

Preceding gene: 21674609

Following gene: 21674607

Centisome position: 78.89

GC content: 65.02

Gene sequence:

>1095_bases
ATGAAATTCATCGACGAATACCGCGACCCCGCTCGCGCTCGCGCTTTGCTTGACCGCATCCGGCAGGTGGCGCGTCATGA
CTGGACGATCATGGAAATCTGCGGCGGGCAGACGCATTCGATTTTGCGCAACGGCATCGACCAGCTTTTGCCGCCGAACG
TGCAGCTTGTGCATGGGCCGGGGTGTCCGGTGTGCGTGACGCCGCTGGAGACTATCGAGCGGGCGCTGGCGATTGCGGCC
AGGCCGAATACGATTCTGACGAGCTTCGGCGACATGCTGCGCGTGCCGGGCAACTCGAAAGACCTGTTCATGGCGCGGAG
CGAGGGAGCGGATGTGCGGGTCGTTTTTTCGCCGCTCGAAGCGTTGCAAATCGCGCGCGACAATCCGTCGAAAGAGGTGG
TGTTTCTCGGCGTCGGTTTTGAGACCACGGCTCCGGCCAACGCGATGGCCGTGCATCAGGCGGCACGGGAAGGGCTTACG
AATTTCAGCGAGCTGGTGAGCCAGGTGATGGTGCCGCCGGCGATGCGCGCAATGCTGTCGTCGCCCGGCAACCGCGTGCA
GGGGTTCCTTGCCGCAGGGCACGTCTGCGCCATCATGGGGTACGAGGAGTACGAGCCGGTGGCGGCGGAGTTCGGCGTGC
CGATCGTGCCCGCCGGGTTCGAGCCGGTCGATCTGCTCGACGCGATTCTGAAGACGGTCGAGCTCCTCGAAGCTGGCCGG
TCGGGCGTGGTGAACGCTTACGGGCGCGTGGTGAGCCGCGAGGGCAATCCAGAGGCGCGGCGGGTGATGCAGGAGGTGTT
CGAGGTCGCCGACCGTCCGTGGCGCGGCATCGGCGTCATTCCGGCAAGCGGGCTTGTGCTGCGCCCGGAGTACAAGCGTT
TCGACGCCGAAAAGCGCTTCGATGTGGGCCACATCGCCCCGCAGGAGTCGCCCCTGTGCAGGAGCGGCGAGGTGCTGCAA
GGCCACCTCAAACCCTCCGACTGCCCGGCCTTCGGCAAAGAATGCACCCCGCAAACCCCGTTCGGCGCAACCATGGTTTC
CAGCGAAGGCGCCTGCGCCGCGTATTATCGGTATCACCGCAACAGTAACACTTGA

Upstream 100 bases:

>100_bases
AGGCTGCCGAGAGCCTCAAGCTTTGGGACGAGCTCATCAAAAGCGGCGCATTTGACGTTGACGGCGAACTTCCGCCGTCG
CCCATCCAGAAGCCGGAAGC

Downstream 100 bases:

>100_bases
AATCATTTACCCCCTACAACGATGAAAAAACTGATTCTCTGCGTACTGACAGCATTTGCATTGCTTGCACCAGCGACAAG
CTATTGCCAGCCCCCATCGC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKFIDEYRDPARARALLDRIRQVARHDWTIMEICGGQTHSILRNGIDQLLPPNVQLVHGPGCPVCVTPLETIERALAIAA
RPNTILTSFGDMLRVPGNSKDLFMARSEGADVRVVFSPLEALQIARDNPSKEVVFLGVGFETTAPANAMAVHQAAREGLT
NFSELVSQVMVPPAMRAMLSSPGNRVQGFLAAGHVCAIMGYEEYEPVAAEFGVPIVPAGFEPVDLLDAILKTVELLEAGR
SGVVNAYGRVVSREGNPEARRVMQEVFEVADRPWRGIGVIPASGLVLRPEYKRFDAEKRFDVGHIAPQESPLCRSGEVLQ
GHLKPSDCPAFGKECTPQTPFGATMVSSEGACAAYYRYHRNSNT

Sequences:

>Translated_364_residues
MKFIDEYRDPARARALLDRIRQVARHDWTIMEICGGQTHSILRNGIDQLLPPNVQLVHGPGCPVCVTPLETIERALAIAA
RPNTILTSFGDMLRVPGNSKDLFMARSEGADVRVVFSPLEALQIARDNPSKEVVFLGVGFETTAPANAMAVHQAAREGLT
NFSELVSQVMVPPAMRAMLSSPGNRVQGFLAAGHVCAIMGYEEYEPVAAEFGVPIVPAGFEPVDLLDAILKTVELLEAGR
SGVVNAYGRVVSREGNPEARRVMQEVFEVADRPWRGIGVIPASGLVLRPEYKRFDAEKRFDVGHIAPQESPLCRSGEVLQ
GHLKPSDCPAFGKECTPQTPFGATMVSSEGACAAYYRYHRNSNT
>Mature_364_residues
MKFIDEYRDPARARALLDRIRQVARHDWTIMEICGGQTHSILRNGIDQLLPPNVQLVHGPGCPVCVTPLETIERALAIAA
RPNTILTSFGDMLRVPGNSKDLFMARSEGADVRVVFSPLEALQIARDNPSKEVVFLGVGFETTAPANAMAVHQAAREGLT
NFSELVSQVMVPPAMRAMLSSPGNRVQGFLAAGHVCAIMGYEEYEPVAAEFGVPIVPAGFEPVDLLDAILKTVELLEAGR
SGVVNAYGRVVSREGNPEARRVMQEVFEVADRPWRGIGVIPASGLVLRPEYKRFDAEKRFDVGHIAPQESPLCRSGEVLQ
GHLKPSDCPAFGKECTPQTPFGATMVSSEGACAAYYRYHRNSNT

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=374, Percent_Identity=46.524064171123, Blast_Score=354, Evalue=5e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39665; Mature: 39665

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIDEYRDPARARALLDRIRQVARHDWTIMEICGGQTHSILRNGIDQLLPPNVQLVHGP
CCCHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECC
GCPVCVTPLETIERALAIAARPNTILTSFGDMLRVPGNSKDLFMARSEGADVRVVFSPLE
CCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEECHHH
ALQIARDNPSKEVVFLGVGFETTAPANAMAVHQAAREGLTNFSELVSQVMVPPAMRAMLS
HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SPGNRVQGFLAAGHVCAIMGYEEYEPVAAEFGVPIVPAGFEPVDLLDAILKTVELLEAGR
CCCHHHHHHHHHCCEEEEECCHHCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
SGVVNAYGRVVSREGNPEARRVMQEVFEVADRPWRGIGVIPASGLVLRPEYKRFDAEKRF
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCHHHHCCCHHCC
DVGHIAPQESPLCRSGEVLQGHLKPSDCPAFGKECTPQTPFGATMVSSEGACAAYYRYHR
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHC
NSNT
CCCC
>Mature Secondary Structure
MKFIDEYRDPARARALLDRIRQVARHDWTIMEICGGQTHSILRNGIDQLLPPNVQLVHGP
CCCHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECC
GCPVCVTPLETIERALAIAARPNTILTSFGDMLRVPGNSKDLFMARSEGADVRVVFSPLE
CCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEECHHH
ALQIARDNPSKEVVFLGVGFETTAPANAMAVHQAAREGLTNFSELVSQVMVPPAMRAMLS
HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SPGNRVQGFLAAGHVCAIMGYEEYEPVAAEFGVPIVPAGFEPVDLLDAILKTVELLEAGR
CCCHHHHHHHHHCCEEEEECCHHCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
SGVVNAYGRVVSREGNPEARRVMQEVFEVADRPWRGIGVIPASGLVLRPEYKRFDAEKRF
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCHHHHCCCHHCC
DVGHIAPQESPLCRSGEVLQGHLKPSDCPAFGKECTPQTPFGATMVSSEGACAAYYRYHR
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHC
NSNT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]