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The map label for this gene is xerD [H]

Identifier: 21674396

GI number: 21674396

Start: 1488517

End: 1488777

Strand: Direct

Name: xerD [H]

Synonym: CT1578

Alternate gene names: 21674396

Gene position: 1488517-1488777 (Clockwise)

Preceding gene: 21674395

Following gene: 21674397

Centisome position: 69.07

GC content: 44.06

Gene sequence:

>261_bases
ATGGGTAGATTATTCTGCATTCAGAACAAAGTTCGCGGCAACCCAATGTTACAAAACATCATCAGCTCAGCAAAAGCCCT
CAAACCGGTAACCCTGCACTGGTTACGGCACAGTTATGCTACCCATCTGCTGGAGTCGGGAACCGACCTCAGGTATATTC
AAGAACTTCTGGGACACAAAAGCAGCAAAACCACCGAAATCTACACCCATGTCAGTCAAAAAAGTTTGCAGAAAATTAAA
AGCCCATTCGATGATTTGTAA

Upstream 100 bases:

>100_bases
AACTACCGGGCGCAAGCTGGAGCCGCAGTCGCAACCGTTGGCATATCCCTGAATCGGATGGGGTGATCGATCTGATGCTC
AGGCAGTTTAAGGGCAAGGC

Downstream 100 bases:

>100_bases
TAAACACGACAAGAGAACACCGGGCAATAACGCGCTACTTTGTTGCGCTTATTCGTCTGATATGGGATGTAAGGCGCAAC
AAAGTAGCGCATATAAGCAA

Product: integrase/recombinase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MGRLFCIQNKVRGNPMLQNIISSAKALKPVTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKIK
SPFDDL

Sequences:

>Translated_86_residues
MGRLFCIQNKVRGNPMLQNIISSAKALKPVTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKIK
SPFDDL
>Mature_85_residues
GRLFCIQNKVRGNPMLQNIISSAKALKPVTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKIKS
PFDDL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=47, Percent_Identity=57.4468085106383, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 9863; Mature: 9731

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLFCIQNKVRGNPMLQNIISSAKALKPVTLHWLRHSYATHLLESGTDLRYIQELLGHK
CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SSKTTEIYTHVSQKSLQKIKSPFDDL
CCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GRLFCIQNKVRGNPMLQNIISSAKALKPVTLHWLRHSYATHLLESGTDLRYIQELLGHK
CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SSKTTEIYTHVSQKSLQKIKSPFDDL
CCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]