| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
Click here to switch to the map view.
The map label for this gene is mpl [H]
Identifier: 21674299
GI number: 21674299
Start: 1385285
End: 1386709
Strand: Direct
Name: mpl [H]
Synonym: CT1479
Alternate gene names: 21674299
Gene position: 1385285-1386709 (Clockwise)
Preceding gene: 21674298
Following gene: 21674300
Centisome position: 64.28
GC content: 60.0
Gene sequence:
>1425_bases ATGAGTTCCATTTACTTCATCGGCATCGGCGGCTCGGCAATGGCTTCGGTCGCCGTGGCGCTTTCGCACATGGGCCACGC TGTCACCGGCTCGGACACGCAGCTCTATCCCCCGATGAGCACCTACCTCGAAAACCATAACATCCGCTATTTCAACAGCT TTTCAGCAGAGAACCTGAAGAGCGCCACGCCCGACCTGGTGGTAGTAGGCAACGCGATAAGCCGGGGCAATCCTGACCTC GAATATGCGCTCGATCAGCACATGGAGCTGATTTCGATGCCGCAACTGGTGCGGCGCGAGCTGATTGGTCGCCACACCTC GATCGTGGTGGCGGGTACGCACGGCAAGACAACAACCACCTCGCTCGTGGCGTGGCTGCTCGAAGCGGGAGGGCTCCTGC CGGGCTTCCTCATCGGCGGCATTCCCGAGAATTTCGGCGACGGCTGCCGTCCATCGGGCCTCTCAGAGCCGGGGTTTTTC GTGACCGAGGGCGACGAGTACGACTCGGCCTTTTTCGACAAGCGCAGCAAGTTCCTGCACTACCGCCCCGACATCGCGAT CATCAACAACGTCGAGTTCGACCATGCGGACATCTTCGATTCGCTCGACGACATCAAGAAAAGCTTCCGCCTGCTGGTGA ACCTCGTGCCGTCGAATGGCTTGCTGATCGTCAACGCGGACGATCCGAATTCGATGGAGGTTTCCGCCAAGGCATTCTGC CGCGTCGAGACCTTCGGCCTGAACGGTAACGCGGAGTGGACAGCGGCGGACATAGCGACAGATACCGATGGTACTTCGTT CACCGTCGTGCGCGACAGCGAAGCGATCGGGCGGGTCAAAGTGCCGCTCTTCGGCAACTACAACGTGATGAATGCGCTCG CCGCCACAGCGGCGGCAATCCGCGCTGGTGTGAGCTTCGAGTCGGTCACGCGCGGTCTTTGCAGCTTTAAGCGCCCGAAG CGCCGCATGGAGCTCGTCGGCGAGTATGCGGGCGGCATCACGCTCATCGAGGATTTCGCGCACCATCCGACGGCCATCCG CCTCACGCTCGGCGCAATTGCAGAGCATTACCCCGGTCGGCGTATCATCGCCTGTTTCGAGCCGCGCTCCAACACCACCA GCCGCAACATTTTCCAGCACGAGCTGTCGGAATGCTTCGGCGATGCCGCGATCGTGGTGCTCGGCAAAGTAAACCGTCCG GAGCGCTACGCCCCCGAAGAAAGGCTTGATGCAGCGCTGCTGTGCCGAGAGCTGAAGGCAAATGGCAAACGCGTTTTTGC CGCAGGAAGCGAGAATTATCCGGAGGATATTGTCCGGTTCATCGAAGCTGAACAACAGCCGGGCGACGTGGTCGTGCTCC TGAGCAACGGCAGTTTCAGCGGCCTGAAGGAGATGCTGGCCGAAAGTTTTCAAAAAAATTCATAA
Upstream 100 bases:
>100_bases TCGATTTTACTTACTATTATTCATCGAAATCGATACCGGTTTTGAGAAAGAAAAAAGCCGGTGAGAGTTCACAGATGTTC AACCAATCGCAAAACCATCC
Downstream 100 bases:
>100_bases AGATTTCACCGGCGAAGTTCTATATCTTTTTATCTTGTGATTTTTGTTCAGTCCCGGAGAACGAGTGACGCCGTCGAGGC AACAATCCGGAACCGGGCCG
Product: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNSFSAENLKSATPDLVVVGNAISRGNPDL EYALDQHMELISMPQLVRRELIGRHTSIVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEPGFF VTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAFC RVETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGLCSFKRPK RRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRIIACFEPRSNTTSRNIFQHELSECFGDAAIVVLGKVNRP ERYAPEERLDAALLCRELKANGKRVFAAGSENYPEDIVRFIEAEQQPGDVVVLLSNGSFSGLKEMLAESFQKNS
Sequences:
>Translated_474_residues MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNSFSAENLKSATPDLVVVGNAISRGNPDL EYALDQHMELISMPQLVRRELIGRHTSIVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEPGFF VTEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAFC RVETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGLCSFKRPK RRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRIIACFEPRSNTTSRNIFQHELSECFGDAAIVVLGKVNRP ERYAPEERLDAALLCRELKANGKRVFAAGSENYPEDIVRFIEAEQQPGDVVVLLSNGSFSGLKEMLAESFQKNS >Mature_473_residues SSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNSFSAENLKSATPDLVVVGNAISRGNPDLE YALDQHMELISMPQLVRRELIGRHTSIVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEPGFFV TEGDEYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAFCR VETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGLCSFKRPKR RMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRIIACFEPRSNTTSRNIFQHELSECFGDAAIVVLGKVNRPE RYAPEERLDAALLCRELKANGKRVFAAGSENYPEDIVRFIEAEQQPGDVVVLLSNGSFSGLKEMLAESFQKNS
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=472, Percent_Identity=40.2542372881356, Blast_Score=327, Evalue=1e-90, Organism=Escherichia coli, GI1786279, Length=430, Percent_Identity=29.7674418604651, Blast_Score=147, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 51628; Mature: 51497
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00697 DNA_LIGASE_A1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNSFSAENLK CCEEEEEEECHHHHHHHHHHHHHCCCEECCCCCEECCCHHHHHCCCCEEEEECCCCCHHH SATPDLVVVGNAISRGNPDLEYALDQHMELISMPQLVRRELIGRHTSIVVAGTHGKTTTT CCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH SLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEPGFFVTEGDEYDSAFFDKRSKFLH HHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEE YRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCCEEECEEEEE RVETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAI EEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH RAGVSFESVTRGLCSFKRPKRRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGR HHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEHHHHHHHCCCC RIIACFEPRSNTTSRNIFQHELSECFGDAAIVVLGKVNRPERYAPEERLDAALLCRELKA EEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC NGKRVFAAGSENYPEDIVRFIEAEQQPGDVVVLLSNGSFSGLKEMLAESFQKNS CCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SSIYFIGIGGSAMASVAVALSHMGHAVTGSDTQLYPPMSTYLENHNIRYFNSFSAENLK CEEEEEEECHHHHHHHHHHHHHCCCEECCCCCEECCCHHHHHCCCCEEEEECCCCCHHH SATPDLVVVGNAISRGNPDLEYALDQHMELISMPQLVRRELIGRHTSIVVAGTHGKTTTT CCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH SLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEPGFFVTEGDEYDSAFFDKRSKFLH HHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEE YRPDIAIINNVEFDHADIFDSLDDIKKSFRLLVNLVPSNGLLIVNADDPNSMEVSAKAFC ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCCEEECEEEEE RVETFGLNGNAEWTAADIATDTDGTSFTVVRDSEAIGRVKVPLFGNYNVMNALAATAAAI EEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH RAGVSFESVTRGLCSFKRPKRRMELVGEYAGGITLIEDFAHHPTAIRLTLGAIAEHYPGR HHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEHHHHHHHCCCC RIIACFEPRSNTTSRNIFQHELSECFGDAAIVVLGKVNRPERYAPEERLDAALLCRELKA EEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC NGKRVFAAGSENYPEDIVRFIEAEQQPGDVVVLLSNGSFSGLKEMLAESFQKNS CCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]