Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 21674223

GI number: 21674223

Start: 1315434

End: 1317638

Strand: Direct

Name: yrrC [H]

Synonym: CT1402

Alternate gene names: 21674223

Gene position: 1315434-1317638 (Clockwise)

Preceding gene: 21674222

Following gene: 21674225

Centisome position: 61.04

GC content: 62.72

Gene sequence:

>2205_bases
ATGCAAAAACCCGCCGACTCACACGAAGAGCGCCTCTCCGGTTCAGTCGAGCGGGTGACTTTTCACAGCGAGGAGTCGGG
CTTCACGGTGCTGCGCCTCCGGGTCGCCGGGCAGCGTGAGCCGGTTGCTGTGGTAGGCCTCGCAACATCACCGGCGGTTG
GAGAATTCATGGAGTGCGTCGGCACGTGGCAGAACGACCGCACGCATGGATTGCAGTTCAAGGCCTCGAAAATCACCCCC
GCACAACCCACTACACTCGAAGGCAAGGAACGCTACCTCGCCTCCGGACAGGTGAAGGGACTCGGCAATTTCTACGCTAA
AAAGCTGATCGAGCGTTTTGGTGACGCCGTGTTCGAAGTGATCGAGAACGATCCGGAGCGGCTGCTTGAAATCCCCGGCA
TCGGGCGCAAGCGGCTCGACATGGTCGTCAAATCGTGGGCCGAGCAGAAAGCGATCCGCGACATCATGCTCTTCCTGCAA
TCGCACGGCATCGGTACAGCGCGGGCCTGGAAGATTTACCGCCGCTACCGCGAACAGGCCATCGCAACGATCACCGAAAA
CCCGTACCGCCTCTCGCTCGACATCGAAGGCATTGGCTTCCAGACCGCCGACGCCATCGCCACGAGCCTCGGCGTCGCGA
AAAATTCACTGATGCGGGCCGAAGCGGGCATCAGCCACGTGCTCGGCGAGCTGTCGCAGAACGGCCACTGTGCGGTGCCG
GAAGAGACGCTGATTGACGAGGCGTCGCGCCTGCTCCAGATCGACCATCCGCTCGTGGTCGAAGCGGTGAAAAATGAAAA
GCTGACGCGCCGCATCGTGGGCGAAACGATCGACGGCGTGCCGTGCATCTTCCTCGAATCGCTGCATCGCGCCGAAACGG
GCGTCGCCTCCGGCCTGCATCGCCTGATGCGCGGCCCGCTGCCGTGGAATGCACTTGATCCGCACGACGCGCTGCCGTGG
ATCGAGGAGACGACAGCTCTCGAACTCTCGCCATCGCAGCGCAGCGCAGTGACGCTCGTGCTGGCGAGCAAGGTCTCGAT
CATCACCGGCGGGCCGGGCGTCGGCAAAACGACGATCCTCAAAGCAATCCTCTCGGTGCTCCAGCGCGAAAAGGTCTCCG
TGGCGCTCTGTGCTCCCACCGGACGCGCGGCCAAACGGCTCACCGAATCGACCGGCATCGAGGCCAAGACGATCCACCGC
CTGCTCGAATTCGACCCGCAGGCGTTTGACTTCAAGCGCGGACGCGGCAACCCGCTCGACGCCTCGTTCGTGGTGGTTGA
CGAAACCTCGATGGTCGATGTGGTGCTGATGCAGAAGCTCGTGGCGGCCATCCCTGACCACGCGGCGGTGGTCTTCGTCG
GCGACGTCGATCAGCTCCCATCGGTCGGTCCCGGCGCGGTGCTCGCCGATATGATCTCGTCGGAGGCGATCCCGACCGTG
CGGCTCACCGAAATCTTCCGGCAGGCCGCCGAGTCGATGATCGTCGTCAACGCCCACCGCATCAACCAGGGCGACATGCC
GCTCACCGCCGAGGGCGAGGAGCTGTCGGATTTCTACGTGGTGAAGGCGGCCTCGGCCGAGGAGATTCACGACAAGGTGA
TACAGCTCGTCACGGAGCGCATCCCGAAGCGCTTCGGCCTCGATGCGGTCAAAGACGTGCAGGTGCTCACGCCGATGAAC
AAGGGGGGCGTCGGCGTGCACGCGCTGAACGCCGAGCTTCAGGCGAAGCTCAACCCAGCTTCCGAGCCGAAGGTCACGCG
CTTCGGCACCACCTTCGCGCCAGGCGACAAGGTGATCCAGACAGTCAACAACTACGACAAGGAGGTCTTCAACGGCGACA
TTGGCCTCATCGAAGCGATCGACCCGGAGGCGGAAATCGCGACAGCCTTCTTCTTCGACCACCACCGCGCCGAGTACGAT
TTCAACGATCTCGACGAACTCTCGCTCGCCTACGCCACAAGCATCCACAAAAGCCAGGGTTCCGAGTACCCGGCTGTCGT
CATTCCGCTCGCCATGCAGCACTTCACGCTGCTCGAACGCAACCTCATCTACACGGCGGTCACGCGCGGACGCAAGCTCG
TGGTGATCGTTGCCGAGCCGAAAGCGCTCACACTCGCCATCAAAAACTGCAAGTCAAAGCGCCGCCTGACCGGGCTCGTG
CAGCGGCTCAGAGAGTCCGGGAAACAAAGCTGGCAAAATTTGTAA

Upstream 100 bases:

>100_bases
GATGCCGGGTGCGACCGCGCACTCGAAGCGTTACAGAAGCTCGCCAACGGAAAGCCGTAAAGCCCGGCTCCGTTCGTCCT
CCACAACAGCCACCCGAATC

Downstream 100 bases:

>100_bases
GCACCCGACCGGCAAACGGCGCTTCAGTTACAGCGTCGCGTAACGCTCCGGCATCTTCGGCAGCCGCTTCGAGGTCAGCG
ATCTCATCGCGCAGGTAAAC

Product: exodeoxyribonuclease V, alpha subunit, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 734; Mature: 734

Protein sequence:

>734_residues
MQKPADSHEERLSGSVERVTFHSEESGFTVLRLRVAGQREPVAVVGLATSPAVGEFMECVGTWQNDRTHGLQFKASKITP
AQPTTLEGKERYLASGQVKGLGNFYAKKLIERFGDAVFEVIENDPERLLEIPGIGRKRLDMVVKSWAEQKAIRDIMLFLQ
SHGIGTARAWKIYRRYREQAIATITENPYRLSLDIEGIGFQTADAIATSLGVAKNSLMRAEAGISHVLGELSQNGHCAVP
EETLIDEASRLLQIDHPLVVEAVKNEKLTRRIVGETIDGVPCIFLESLHRAETGVASGLHRLMRGPLPWNALDPHDALPW
IEETTALELSPSQRSAVTLVLASKVSIITGGPGVGKTTILKAILSVLQREKVSVALCAPTGRAAKRLTESTGIEAKTIHR
LLEFDPQAFDFKRGRGNPLDASFVVVDETSMVDVVLMQKLVAAIPDHAAVVFVGDVDQLPSVGPGAVLADMISSEAIPTV
RLTEIFRQAAESMIVVNAHRINQGDMPLTAEGEELSDFYVVKAASAEEIHDKVIQLVTERIPKRFGLDAVKDVQVLTPMN
KGGVGVHALNAELQAKLNPASEPKVTRFGTTFAPGDKVIQTVNNYDKEVFNGDIGLIEAIDPEAEIATAFFFDHHRAEYD
FNDLDELSLAYATSIHKSQGSEYPAVVIPLAMQHFTLLERNLIYTAVTRGRKLVVIVAEPKALTLAIKNCKSKRRLTGLV
QRLRESGKQSWQNL

Sequences:

>Translated_734_residues
MQKPADSHEERLSGSVERVTFHSEESGFTVLRLRVAGQREPVAVVGLATSPAVGEFMECVGTWQNDRTHGLQFKASKITP
AQPTTLEGKERYLASGQVKGLGNFYAKKLIERFGDAVFEVIENDPERLLEIPGIGRKRLDMVVKSWAEQKAIRDIMLFLQ
SHGIGTARAWKIYRRYREQAIATITENPYRLSLDIEGIGFQTADAIATSLGVAKNSLMRAEAGISHVLGELSQNGHCAVP
EETLIDEASRLLQIDHPLVVEAVKNEKLTRRIVGETIDGVPCIFLESLHRAETGVASGLHRLMRGPLPWNALDPHDALPW
IEETTALELSPSQRSAVTLVLASKVSIITGGPGVGKTTILKAILSVLQREKVSVALCAPTGRAAKRLTESTGIEAKTIHR
LLEFDPQAFDFKRGRGNPLDASFVVVDETSMVDVVLMQKLVAAIPDHAAVVFVGDVDQLPSVGPGAVLADMISSEAIPTV
RLTEIFRQAAESMIVVNAHRINQGDMPLTAEGEELSDFYVVKAASAEEIHDKVIQLVTERIPKRFGLDAVKDVQVLTPMN
KGGVGVHALNAELQAKLNPASEPKVTRFGTTFAPGDKVIQTVNNYDKEVFNGDIGLIEAIDPEAEIATAFFFDHHRAEYD
FNDLDELSLAYATSIHKSQGSEYPAVVIPLAMQHFTLLERNLIYTAVTRGRKLVVIVAEPKALTLAIKNCKSKRRLTGLV
QRLRESGKQSWQNL
>Mature_734_residues
MQKPADSHEERLSGSVERVTFHSEESGFTVLRLRVAGQREPVAVVGLATSPAVGEFMECVGTWQNDRTHGLQFKASKITP
AQPTTLEGKERYLASGQVKGLGNFYAKKLIERFGDAVFEVIENDPERLLEIPGIGRKRLDMVVKSWAEQKAIRDIMLFLQ
SHGIGTARAWKIYRRYREQAIATITENPYRLSLDIEGIGFQTADAIATSLGVAKNSLMRAEAGISHVLGELSQNGHCAVP
EETLIDEASRLLQIDHPLVVEAVKNEKLTRRIVGETIDGVPCIFLESLHRAETGVASGLHRLMRGPLPWNALDPHDALPW
IEETTALELSPSQRSAVTLVLASKVSIITGGPGVGKTTILKAILSVLQREKVSVALCAPTGRAAKRLTESTGIEAKTIHR
LLEFDPQAFDFKRGRGNPLDASFVVVDETSMVDVVLMQKLVAAIPDHAAVVFVGDVDQLPSVGPGAVLADMISSEAIPTV
RLTEIFRQAAESMIVVNAHRINQGDMPLTAEGEELSDFYVVKAASAEEIHDKVIQLVTERIPKRFGLDAVKDVQVLTPMN
KGGVGVHALNAELQAKLNPASEPKVTRFGTTFAPGDKVIQTVNNYDKEVFNGDIGLIEAIDPEAEIATAFFFDHHRAEYD
FNDLDELSLAYATSIHKSQGSEYPAVVIPLAMQHFTLLERNLIYTAVTRGRKLVVIVAEPKALTLAIKNCKSKRRLTGLV
QRLRESGKQSWQNL

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=449, Percent_Identity=29.8440979955457, Blast_Score=149, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 80443; Mature: 80443

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPADSHEERLSGSVERVTFHSEESGFTVLRLRVAGQREPVAVVGLATSPAVGEFMECV
CCCCCCCHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHH
GTWQNDRTHGLQFKASKITPAQPTTLEGKERYLASGQVKGLGNFYAKKLIERFGDAVFEV
HCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IENDPERLLEIPGIGRKRLDMVVKSWAEQKAIRDIMLFLQSHGIGTARAWKIYRRYREQA
HHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IATITENPYRLSLDIEGIGFQTADAIATSLGVAKNSLMRAEAGISHVLGELSQNGHCAVP
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EETLIDEASRLLQIDHPLVVEAVKNEKLTRRIVGETIDGVPCIFLESLHRAETGVASGLH
HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RLMRGPLPWNALDPHDALPWIEETTALELSPSQRSAVTLVLASKVSIITGGPGVGKTTIL
HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCEEEEECCCCCCHHHHH
KAILSVLQREKVSVALCAPTGRAAKRLTESTGIEAKTIHRLLEFDPQAFDFKRGRGNPLD
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCCCCCCCCC
ASFVVVDETSMVDVVLMQKLVAAIPDHAAVVFVGDVDQLPSVGPGAVLADMISSEAIPTV
CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHCCCCCH
RLTEIFRQAAESMIVVNAHRINQGDMPLTAEGEELSDFYVVKAASAEEIHDKVIQLVTER
HHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
IPKRFGLDAVKDVQVLTPMNKGGVGVHALNAELQAKLNPASEPKVTRFGTTFAPGDKVIQ
HHHHHCCCHHCCHHEECCCCCCCCEEEEECCCHHEECCCCCCCCEEECCCCCCCHHHHHH
TVNNYDKEVFNGDIGLIEAIDPEAEIATAFFFDHHRAEYDFNDLDELSLAYATSIHKSQG
HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
SEYPAVVIPLAMQHFTLLERNLIYTAVTRGRKLVVIVAEPKALTLAIKNCKSKRRLTGLV
CCCCEEEEHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHH
QRLRESGKQSWQNL
HHHHHHHHHHHCCC
>Mature Secondary Structure
MQKPADSHEERLSGSVERVTFHSEESGFTVLRLRVAGQREPVAVVGLATSPAVGEFMECV
CCCCCCCHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHH
GTWQNDRTHGLQFKASKITPAQPTTLEGKERYLASGQVKGLGNFYAKKLIERFGDAVFEV
HCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IENDPERLLEIPGIGRKRLDMVVKSWAEQKAIRDIMLFLQSHGIGTARAWKIYRRYREQA
HHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IATITENPYRLSLDIEGIGFQTADAIATSLGVAKNSLMRAEAGISHVLGELSQNGHCAVP
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EETLIDEASRLLQIDHPLVVEAVKNEKLTRRIVGETIDGVPCIFLESLHRAETGVASGLH
HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RLMRGPLPWNALDPHDALPWIEETTALELSPSQRSAVTLVLASKVSIITGGPGVGKTTIL
HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCEEEEECCCCCCHHHHH
KAILSVLQREKVSVALCAPTGRAAKRLTESTGIEAKTIHRLLEFDPQAFDFKRGRGNPLD
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCCCCCCCCC
ASFVVVDETSMVDVVLMQKLVAAIPDHAAVVFVGDVDQLPSVGPGAVLADMISSEAIPTV
CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHCCCCCH
RLTEIFRQAAESMIVVNAHRINQGDMPLTAEGEELSDFYVVKAASAEEIHDKVIQLVTER
HHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
IPKRFGLDAVKDVQVLTPMNKGGVGVHALNAELQAKLNPASEPKVTRFGTTFAPGDKVIQ
HHHHHCCCHHCCHHEECCCCCCCCEEEEECCCHHEECCCCCCCCEEECCCCCCCHHHHHH
TVNNYDKEVFNGDIGLIEAIDPEAEIATAFFFDHHRAEYDFNDLDELSLAYATSIHKSQG
HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
SEYPAVVIPLAMQHFTLLERNLIYTAVTRGRKLVVIVAEPKALTLAIKNCKSKRRLTGLV
CCCCEEEEHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHH
QRLRESGKQSWQNL
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]