| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is hflX [H]
Identifier: 21674206
GI number: 21674206
Start: 1298423
End: 1299748
Strand: Reverse
Name: hflX [H]
Synonym: CT1384
Alternate gene names: 21674206
Gene position: 1299748-1298423 (Counterclockwise)
Preceding gene: 21674210
Following gene: 21674205
Centisome position: 60.31
GC content: 58.37
Gene sequence:
>1326_bases TTGACGACCATTCCATCACCGGAACCCCGGGAGCGTGCCGTACTTGTTGGCATCACTTCCACGCCTGACATTCCCAGACA CCTTGTCGAAGAGTATCTCGACGAGCTGAAGTTTCTTGCCGATACGGCAGGAGCCGACGTTATCACCTCGATCATCCAGG AAAAGAAACAGCCCGATCCTGCCACCTGCATCGGCAGCGGCAAGGCCGAGGATCTGGCCGGGCTGGTTGAGGCCGATTCG ATCGATATTGTCATTTTCGATGACGACCTTACCCCCGTGCAGGTGAGGAACCTCGAACGCATTCTCAAGTGCAAGGTGAT CGACCGCACCGGCCTCATTTTGCAAATCTTCGCCATCCGCGCCAAGTCCGCGCAGGCTCGTACGCAGGTGGAGCTGGCGC AGCTCGAATATCTTCTGCCGCGTCTCTCCGGCGCCTGGACGCACCTTTCCAAGCAGAAGGGCGGTATTGGCACTAAAGGA CCCGGCGAAACGCAGATCGAGACCGACCGGCGACTGGTGCGCAACCGCATCGCCTCGCTCAAAAAGAAGCTTCGCGCCGT CTCGCTCCAGCACGACACCCAGACCCGTGGCCGGGCGGCTGTGCCGCGCGTGGCGCTGGTGGGCTACACCAACGCGGGCA AATCGACCCTGATGAACGCGCTTTGCCCCGAAGCTGGCGCCTATGCCGAAAACCGGCTTTTCGCAACGCTCGACACCAAG ACCCGGCGGCTTGAACTCAAAATCAACAAGCTGGTGCTGCTCTCCGATACGGTCGGCTTCATCCGCAAGCTGCCGCACAC GCTGGTCGAGAGCTTCAAATCCACGCTTGACGAGGTGTTGCAGGCGGACTTCCTTCTGCATGTCATCGACGTGAGCCATC CGGGTTTTGAGGAGCATATGCAGGTGGTGCGCGAGACGCTTAAAGAGATTGGCGTCAAGCACGACCACATCATCGAGGTG TTCAACAAGATCGACGCCCTCGACGATCCTGCAATTCTGACCGGCCTGCGCGGCAAGTATCCCGACGCGGTGTTTATCTC CGCGGTGCGCGGCTTGAATCTTTCGGCGTTGAAGGAAACTATTGCCAATTACGTCGCCCGCGACTACAAGACGCGCAAGG TGAAAACGCACGTTTCGAACTACAAGCTGATCGGCTACCTCTACGACCACGCCGAGGTGATCGACAAGAAGCACGTTGAT GAAGATGTGCTGCTCACCATTCGCGTGCACCGCAACAACCTCAAGCAGATCGACGCCATGCTCAAGGCGTCGGCATCGAA AAACCATGCCGCTGCAAATCTTCAACACCACGAAACGCACGATTGA
Upstream 100 bases:
>100_bases AAATAAAATAATGGCTCTAATATAGCAATAGCAAGGAGGTTCGCCGTTATCTGCCGATCACGGAGCGCTGTTGCATCAGA ATCTATCCCAGACGATCCAT
Downstream 100 bases:
>100_bases CGAAACACTCCTCGCCGAAGTCATCCGGCTGGTAATTGGCGAAGAGGGCGGTGCGGTCGGCTCCATCGAGGCGATCTACT GCGGCAACAAGATGATCCGC
Product: GTP-binding protein HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MTTIPSPEPRERAVLVGITSTPDIPRHLVEEYLDELKFLADTAGADVITSIIQEKKQPDPATCIGSGKAEDLAGLVEADS IDIVIFDDDLTPVQVRNLERILKCKVIDRTGLILQIFAIRAKSAQARTQVELAQLEYLLPRLSGAWTHLSKQKGGIGTKG PGETQIETDRRLVRNRIASLKKKLRAVSLQHDTQTRGRAAVPRVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTK TRRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDVSHPGFEEHMQVVRETLKEIGVKHDHIIEV FNKIDALDDPAILTGLRGKYPDAVFISAVRGLNLSALKETIANYVARDYKTRKVKTHVSNYKLIGYLYDHAEVIDKKHVD EDVLLTIRVHRNNLKQIDAMLKASASKNHAAANLQHHETHD
Sequences:
>Translated_441_residues MTTIPSPEPRERAVLVGITSTPDIPRHLVEEYLDELKFLADTAGADVITSIIQEKKQPDPATCIGSGKAEDLAGLVEADS IDIVIFDDDLTPVQVRNLERILKCKVIDRTGLILQIFAIRAKSAQARTQVELAQLEYLLPRLSGAWTHLSKQKGGIGTKG PGETQIETDRRLVRNRIASLKKKLRAVSLQHDTQTRGRAAVPRVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTK TRRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDVSHPGFEEHMQVVRETLKEIGVKHDHIIEV FNKIDALDDPAILTGLRGKYPDAVFISAVRGLNLSALKETIANYVARDYKTRKVKTHVSNYKLIGYLYDHAEVIDKKHVD EDVLLTIRVHRNNLKQIDAMLKASASKNHAAANLQHHETHD >Mature_440_residues TTIPSPEPRERAVLVGITSTPDIPRHLVEEYLDELKFLADTAGADVITSIIQEKKQPDPATCIGSGKAEDLAGLVEADSI DIVIFDDDLTPVQVRNLERILKCKVIDRTGLILQIFAIRAKSAQARTQVELAQLEYLLPRLSGAWTHLSKQKGGIGTKGP GETQIETDRRLVRNRIASLKKKLRAVSLQHDTQTRGRAAVPRVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTKT RRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDVSHPGFEEHMQVVRETLKEIGVKHDHIIEVF NKIDALDDPAILTGLRGKYPDAVFISAVRGLNLSALKETIANYVARDYKTRKVKTHVSNYKLIGYLYDHAEVIDKKHVDE DVLLTIRVHRNNLKQIDAMLKASASKNHAAANLQHHETHD
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=271, Percent_Identity=33.210332103321, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI310133116, Length=275, Percent_Identity=33.4545454545455, Blast_Score=129, Evalue=6e-30, Organism=Homo sapiens, GI310124269, Length=263, Percent_Identity=33.8403041825095, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI310124267, Length=263, Percent_Identity=33.8403041825095, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI310124171, Length=263, Percent_Identity=33.8403041825095, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI310124169, Length=263, Percent_Identity=33.8403041825095, Blast_Score=127, Evalue=3e-29, Organism=Escherichia coli, GI1790615, Length=403, Percent_Identity=43.424317617866, Blast_Score=295, Evalue=5e-81, Organism=Caenorhabditis elegans, GI17561038, Length=325, Percent_Identity=29.8461538461538, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24650079, Length=353, Percent_Identity=31.1614730878187, Blast_Score=123, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 49111; Mature: 48980
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIPSPEPRERAVLVGITSTPDIPRHLVEEYLDELKFLADTAGADVITSIIQEKKQPDP CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC ATCIGSGKAEDLAGLVEADSIDIVIFDDDLTPVQVRNLERILKCKVIDRTGLILQIFAIR CCEECCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH AKSAQARTQVELAQLEYLLPRLSGAWTHLSKQKGGIGTKGPGETQIETDRRLVRNRIASL HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH KKKLRAVSLQHDTQTRGRAAVPRVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTK HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCC TRRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDVSHPGFEEHM CEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHH QVVRETLKEIGVKHDHIIEVFNKIDALDDPAILTGLRGKYPDAVFISAVRGLNLSALKET HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH IANYVARDYKTRKVKTHVSNYKLIGYLYDHAEVIDKKHVDEDVLLTIRVHRNNLKQIDAM HHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH LKASASKNHAAANLQHHETHD HHHCCCCCCHHCCCCCCCCCC >Mature Secondary Structure TTIPSPEPRERAVLVGITSTPDIPRHLVEEYLDELKFLADTAGADVITSIIQEKKQPDP CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC ATCIGSGKAEDLAGLVEADSIDIVIFDDDLTPVQVRNLERILKCKVIDRTGLILQIFAIR CCEECCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH AKSAQARTQVELAQLEYLLPRLSGAWTHLSKQKGGIGTKGPGETQIETDRRLVRNRIASL HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH KKKLRAVSLQHDTQTRGRAAVPRVALVGYTNAGKSTLMNALCPEAGAYAENRLFATLDTK HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCC TRRLELKINKLVLLSDTVGFIRKLPHTLVESFKSTLDEVLQADFLLHVIDVSHPGFEEHM CEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHH QVVRETLKEIGVKHDHIIEVFNKIDALDDPAILTGLRGKYPDAVFISAVRGLNLSALKET HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH IANYVARDYKTRKVKTHVSNYKLIGYLYDHAEVIDKKHVDEDVLLTIRVHRNNLKQIDAM HHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH LKASASKNHAAANLQHHETHD HHHCCCCCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]