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The map label for this gene is rbn [C]

Identifier: 21674148

GI number: 21674148

Start: 1248025

End: 1249293

Strand: Reverse

Name: rbn [C]

Synonym: CT1325

Alternate gene names: 21674148

Gene position: 1249293-1248025 (Counterclockwise)

Preceding gene: 21674149

Following gene: 21674147

Centisome position: 57.97

GC content: 53.9

Gene sequence:

>1269_bases
ATGAAAGAAAACAGCAAAGAGGAACGCGGTCGCCTGCACGGTATGGTGTGGTCGTCATCCGCTTTTTTTTCGTTCATGTG
GAGGCACTTCGTTCACGACCGTGTCCTCATGAGCGCTGGTTCACTTGCGTTTCAGACTCTGCTTTCGCTTGTACCACTCA
TGGCGGTGACGCTGTCGATCCTGAAGGTTTTTCCGGTTTTCGCTTCGCTCAAACAGTACATTGGCGACTTTCTGTTCCAG
AATTTCGCTCCCGCCCAGGGATCGATCCTGAAAGGCTATCTCTGGGAGTTCATCGATAAAACCTCTTCGCTTTCCACCGT
CGGAGGTCTTTTTCTCATCGTCATCGTTCTGTTTCTGATTTCGACCATCGATCAGACGCTCAACGATATTTGGGAGGTGC
AAACCCCGCGCCGGAGGTTGCAGGGTTTCACGCTTTACTGGACGGTGCTGACGCTCGGTCCAGTTTTCATTGGCACCAGC
GTCCTGGCCAGCTCGTACGTGTGGTATTCGGTGTTTGCAGAGGGGGCGCTGCTTGAAATGAAAGCGCGAGTGCTCTCGTA
TGTGCCGGTGTTAAACTCCGTCATTGCCTTTTTTCTGCTGTACATGCTGGTTCCAAACCGCAAGGTTCGCTTCACTCATG
CACTTGCCGGTGGCGTGCTTGCTGCTGTGCTTTTCGAGCTTGCCAAAAGATGGTTCACCTTTTACGTTTCGAGTTTCGCC
ACCTTTGAGCATATTTACGGCGCGCTTTCGGTCGTTCCGATGCTCTTTTTCTGGATATACCTCGAATGGGTGGTGGTGCT
GACTGGCGCGGAGTTTGTCTTTTCACTCGGCTACTTCAGGCCTGCGGTGTGCCCCGCACGGGAGTTCGATCCCTTGCAGG
GAGTGCCAGAGGTGGTCGCCGTCTTGCGTTCAGTGTGGCGCGCACAGCTATCCGGGAGTTTTATGACCGGTAAAAAACTT
CTGGCATCGGAAAATAGTGGCGACCGTAGTAAATTGGGCCATGTCGTCGATTTTCTGAAGCAGAACGGGATTCTGCACAA
GACCGCCGATGGTGGACTTGCCATCAGTGCAGATCTTCACGCCGTTACCTTGTACGACCTCTACACCAAGCTTCCGAGGG
AGCTTTTCAATGGAGACGGGTGCGTGGATGAAGGACCGGCGAGTCGCGAATTCGAGCCGCTCCGGGCAGAGGTCCGCGAA
GCGCTCAGGAGCGCGATGCAGACGCCGCTGATTACGCTGGTGAACGATTCAACGGAAAAGGATTCATGA

Upstream 100 bases:

>100_bases
TGCCGCGTTCTCTACCTTGCTCTAACGGCCCCTCAGCTATTATCCGTCAAGGCGCTGGATGGTAGCATTGCTTGAAACCG
GACGCGATTCTATGGTGGCA

Downstream 100 bases:

>100_bases
GTTATCAGGTTATAGCGCGAAAGTACAGGCCTTCACGGTTTGCCGACATTACCGCGCAGGAGCATATTACCGGCACGATC
CAGAACTCACTACGGATGGG

Product: ribonuclease BN, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MKENSKEERGRLHGMVWSSSAFFSFMWRHFVHDRVLMSAGSLAFQTLLSLVPLMAVTLSILKVFPVFASLKQYIGDFLFQ
NFAPAQGSILKGYLWEFIDKTSSLSTVGGLFLIVIVLFLISTIDQTLNDIWEVQTPRRRLQGFTLYWTVLTLGPVFIGTS
VLASSYVWYSVFAEGALLEMKARVLSYVPVLNSVIAFFLLYMLVPNRKVRFTHALAGGVLAAVLFELAKRWFTFYVSSFA
TFEHIYGALSVVPMLFFWIYLEWVVVLTGAEFVFSLGYFRPAVCPAREFDPLQGVPEVVAVLRSVWRAQLSGSFMTGKKL
LASENSGDRSKLGHVVDFLKQNGILHKTADGGLAISADLHAVTLYDLYTKLPRELFNGDGCVDEGPASREFEPLRAEVRE
ALRSAMQTPLITLVNDSTEKDS

Sequences:

>Translated_422_residues
MKENSKEERGRLHGMVWSSSAFFSFMWRHFVHDRVLMSAGSLAFQTLLSLVPLMAVTLSILKVFPVFASLKQYIGDFLFQ
NFAPAQGSILKGYLWEFIDKTSSLSTVGGLFLIVIVLFLISTIDQTLNDIWEVQTPRRRLQGFTLYWTVLTLGPVFIGTS
VLASSYVWYSVFAEGALLEMKARVLSYVPVLNSVIAFFLLYMLVPNRKVRFTHALAGGVLAAVLFELAKRWFTFYVSSFA
TFEHIYGALSVVPMLFFWIYLEWVVVLTGAEFVFSLGYFRPAVCPAREFDPLQGVPEVVAVLRSVWRAQLSGSFMTGKKL
LASENSGDRSKLGHVVDFLKQNGILHKTADGGLAISADLHAVTLYDLYTKLPRELFNGDGCVDEGPASREFEPLRAEVRE
ALRSAMQTPLITLVNDSTEKDS
>Mature_422_residues
MKENSKEERGRLHGMVWSSSAFFSFMWRHFVHDRVLMSAGSLAFQTLLSLVPLMAVTLSILKVFPVFASLKQYIGDFLFQ
NFAPAQGSILKGYLWEFIDKTSSLSTVGGLFLIVIVLFLISTIDQTLNDIWEVQTPRRRLQGFTLYWTVLTLGPVFIGTS
VLASSYVWYSVFAEGALLEMKARVLSYVPVLNSVIAFFLLYMLVPNRKVRFTHALAGGVLAAVLFELAKRWFTFYVSSFA
TFEHIYGALSVVPMLFFWIYLEWVVVLTGAEFVFSLGYFRPAVCPAREFDPLQGVPEVVAVLRSVWRAQLSGSFMTGKKL
LASENSGDRSKLGHVVDFLKQNGILHKTADGGLAISADLHAVTLYDLYTKLPRELFNGDGCVDEGPASREFEPLRAEVRE
ALRSAMQTPLITLVNDSTEKDS

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=260, Percent_Identity=38.4615384615385, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1325_CHLTE (Q8KCT5)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_662213.1
- GeneID:   1006695
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT1325
- NMPDR:   fig|194439.1.peg.1307
- TIGR:   CT1325
- HOGENOM:   HBG405288
- OMA:   IRNAHAT
- ProtClustDB:   CLSK571629
- BioCyc:   CTEP194439:CT_1325-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47319; Mature: 47319

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe50e668)-; HASH(0xc653b80)-; HASH(0xe3dcfc8)-; HASH(0xdf216b8)-; HASH(0xe92fdb8)-; HASH(0xe7c04c4)-; HASH(0xe442300)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CH
>Mature Secondary Structure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CH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12093901