| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21674143
Identifier: 21674143
GI number: 21674143
Start: 1241819
End: 1243225
Strand: Direct
Name: 21674143
Synonym: CT1320
Alternate gene names: NA
Gene position: 1241819-1243225 (Clockwise)
Preceding gene: 21674142
Following gene: 21674144
Centisome position: 57.63
GC content: 56.01
Gene sequence:
>1407_bases ATGCTGACAGACGATCTTCAGACAGCCGAATCATCCGTGTCCCTCACAAATGGCGTAGCACCATCCCTCGAAAAGCTCGC GGCAGAACAGAAGAGCAGAAAAAAATGGCTGCTGGTCCAGCCCAAAAGCCAGACCAGCATGATGGTCGATTCCGGCGCGG TAAGTATGCCGCTGAACCTGATCATGGTCGCCACGCTGGCCAGCAAGTATTTTGACGTCACCTTCCTCGACGAGAGAACT GGCGACACCATTCCCCAAGACTTCTCCGGCTACGATGTTGTGGCCATCACCTCGCGCACGCTCAATGCCAAGAACGCCTA CCGTATCGGCGACCGCGCGAAAGCGCAGGGCAAAATCGTGCTGATCGGCGGTGTGCACCCAACCATGCTGACCGACGAAG CCTCATTGCACTGCACCAGCGTGATTTACGGTGAAATCGAGTCGGTCTGGGAGGAGCTTGCCATCGACATTTTCCGGGGC AAAATGAAGAGCGTATACAAGGCCAGCAACCTGAAGCCGATGACCACCATGACGCCGCCCGACTTCAGCTTCGCCCTCAA CTCACCGCACGCGAAAAAATACAGCCAGCTCATTCCGATTCTGGCCACCAAGGGGTGTCCGGTGGGATGCAGCTTCTGCA CCACGCCGACGGTCTATGGCAAGAGCTTCCGCTACCGCGAAATCGACCTGGTGCTTGACGAAATGCGCGCCCATCAGGAG CGGCTTGGCAAAAAGAAGGTGCGCTTCTCCTTCATGGACGACAACATCAGTTTCAGGCCAAAATACTTCATGGAGCTGCT CGAAGGCATGGCCAAGCTCGGTGTACGCTGGAACGCCAACATCTCGATGAACTTCCTGCAAAAGCCGGAAGTTGCCGAAC TCGCCGGACGTTCGGGCTGCGAACTCATGAGCATCGGCTTCGAATCGCTCAACCCCGACATTCTCAAGAGCATGAACAAG GGGTCAAACCGCCTCCAGAACTACGAGGCTGTCGTCAGCAACCTGCACAAGCACAAAATCGCCATCCAGGGCTACTTCAT TTTCGGCTTCGACGACGACAGCGAAAAGAGCTTCCAGGCTACCTACGACTTCATCATGCAGAACCGCATCGAGTTCCCGG TCTTCTCGCTGTTGACGCCCTTCCCCGGCACCCCCTATTTCGAGGAGATGAAGGATCGGGTGCGCCATTTCGACTGGGAC AAGTATGACACCTACCACTACATGTTCGAGCCGAAGAAGCTCGGCGGCGAAAAGCTGCTCGAAAACTTCATCAAGCTCCA GCGCGAGGTGTACAAAGGCAGCGCCATCATGAAGCGAATGCAGGGCAAACCGCTGAACTGGGTCTGGTTCGTCAACTTCC TCATGAACCGCTTCACCCGAAAACTCACGCCGGAGATGTACCTCTGA
Upstream 100 bases:
>100_bases GAATCTCCCCCTGTTTTTAAAGGCCTTTACAAGGTTTTTAGGGAAATTTTCATACTTTATAAGTTCATCCTGTAGTCCTT ACCACTTATCCTCGAAAGGC
Downstream 100 bases:
>100_bases GTCGCTGAAAAAGCTGATCGCTCAAAGAATAGGCAGAAACAGAACAGATGCCGGTCATCGAGAACATAACCGGCGTCTCT TTTTTCGAGCGTTTAGAATC
Product: BchE/P-methylase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MLTDDLQTAESSVSLTNGVAPSLEKLAAEQKSRKKWLLVQPKSQTSMMVDSGAVSMPLNLIMVATLASKYFDVTFLDERT GDTIPQDFSGYDVVAITSRTLNAKNAYRIGDRAKAQGKIVLIGGVHPTMLTDEASLHCTSVIYGEIESVWEELAIDIFRG KMKSVYKASNLKPMTTMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQE RLGKKKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLQKPEVAELAGRSGCELMSIGFESLNPDILKSMNK GSNRLQNYEAVVSNLHKHKIAIQGYFIFGFDDDSEKSFQATYDFIMQNRIEFPVFSLLTPFPGTPYFEEMKDRVRHFDWD KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPLNWVWFVNFLMNRFTRKLTPEMYL
Sequences:
>Translated_468_residues MLTDDLQTAESSVSLTNGVAPSLEKLAAEQKSRKKWLLVQPKSQTSMMVDSGAVSMPLNLIMVATLASKYFDVTFLDERT GDTIPQDFSGYDVVAITSRTLNAKNAYRIGDRAKAQGKIVLIGGVHPTMLTDEASLHCTSVIYGEIESVWEELAIDIFRG KMKSVYKASNLKPMTTMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQE RLGKKKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLQKPEVAELAGRSGCELMSIGFESLNPDILKSMNK GSNRLQNYEAVVSNLHKHKIAIQGYFIFGFDDDSEKSFQATYDFIMQNRIEFPVFSLLTPFPGTPYFEEMKDRVRHFDWD KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPLNWVWFVNFLMNRFTRKLTPEMYL >Mature_468_residues MLTDDLQTAESSVSLTNGVAPSLEKLAAEQKSRKKWLLVQPKSQTSMMVDSGAVSMPLNLIMVATLASKYFDVTFLDERT GDTIPQDFSGYDVVAITSRTLNAKNAYRIGDRAKAQGKIVLIGGVHPTMLTDEASLHCTSVIYGEIESVWEELAIDIFRG KMKSVYKASNLKPMTTMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQE RLGKKKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLQKPEVAELAGRSGCELMSIGFESLNPDILKSMNK GSNRLQNYEAVVSNLHKHKIAIQGYFIFGFDDDSEKSFQATYDFIMQNRIEFPVFSLLTPFPGTPYFEEMKDRVRHFDWD KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPLNWVWFVNFLMNRFTRKLTPEMYL
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 53506; Mature: 53506
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDDLQTAESSVSLTNGVAPSLEKLAAEQKSRKKWLLVQPKSQTSMMVDSGAVSMPLNL CCCCCHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCCHHH IMVATLASKYFDVTFLDERTGDTIPQDFSGYDVVAITSRTLNAKNAYRIGDRAKAQGKIV HHHHHHHHHHCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCEE LIGGVHPTMLTDEASLHCTSVIYGEIESVWEELAIDIFRGKMKSVYKASNLKPMTTMTPP EEECCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQE CCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH RLGKKKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLQKPEVAELAGRSGC HHCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCEEEECCCCCCHHHHCCCCCC ELMSIGFESLNPDILKSMNKGSNRLQNYEAVVSNLHKHKIAIQGYFIFGFDDDSEKSFQA EEEECCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHH TYDFIMQNRIEFPVFSLLTPFPGTPYFEEMKDRVRHFDWDKYDTYHYMFEPKKLGGEKLL HHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHH ENFIKLQREVYKGSAIMKRMQGKPLNWVWFVNFLMNRFTRKLTPEMYL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLTDDLQTAESSVSLTNGVAPSLEKLAAEQKSRKKWLLVQPKSQTSMMVDSGAVSMPLNL CCCCCHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCCHHH IMVATLASKYFDVTFLDERTGDTIPQDFSGYDVVAITSRTLNAKNAYRIGDRAKAQGKIV HHHHHHHHHHCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCEE LIGGVHPTMLTDEASLHCTSVIYGEIESVWEELAIDIFRGKMKSVYKASNLKPMTTMTPP EEECCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSFRYREIDLVLDEMRAHQE CCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH RLGKKKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLQKPEVAELAGRSGC HHCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCEEEECCCCCCHHHHCCCCCC ELMSIGFESLNPDILKSMNKGSNRLQNYEAVVSNLHKHKIAIQGYFIFGFDDDSEKSFQA EEEECCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHH TYDFIMQNRIEFPVFSLLTPFPGTPYFEEMKDRVRHFDWDKYDTYHYMFEPKKLGGEKLL HHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHH ENFIKLQREVYKGSAIMKRMQGKPLNWVWFVNFLMNRFTRKLTPEMYL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]