Definition Chlorobium tepidum TLS, complete genome.
Accession NC_002932
Length 2,154,946

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The map label for this gene is 21673903

Identifier: 21673903

GI number: 21673903

Start: 1018234

End: 1018815

Strand: Reverse

Name: 21673903

Synonym: CT1077

Alternate gene names: NA

Gene position: 1018815-1018234 (Counterclockwise)

Preceding gene: 21673904

Following gene: 21673902

Centisome position: 47.28

GC content: 53.61

Gene sequence:

>582_bases
ATGCACACCATTCCGGCGCCTTTTCAGATTTATGCTTACTGGGCCATCGCCCTCATCATCGGGCTTGCCTTCTTTCGGAA
AGATGTCACCGCACCCAATCCGCCATTCGATAAACGCCGTATCGGCCTGCTTGTCTTTTCGGTTGTAATTCTCGTTCTGA
ACGCCTACATCTACTCCAACTCGACCACCGATGGCGGCCGGATGCTCGACCCCTGGAGCGCGCTCATCTTCAGCGTTGGC
AACGGCATCGCAGAGACATTCATGTTCTACGCCGTGTTCCGTCTTGGTCAGTCGCTTGTCGGCAAATTCACCCAAAACCA
GTGGGCAGGCTTTCTCGTAGGTTTTCTTTTTTTCATGAGCTACAGCGGCCTGATTCACGGGCTTTTCTGGCTGAACATTC
TGCCGGAGCACGTTGTACAGACCAGCCCGTTCAAGCCTTTTTTCATGCCGACCCAACTCTTGATCGCCCTCTCCTGGGCG
CTCTCGTTCTTCTGGTACCGTGACCTGCGCACCGTGTTTTTCCTGCACGCCGTCGTTGACCTGACCATGATTATGAACGT
GAAGTTCTCGATGTTTCCATGA

Upstream 100 bases:

>100_bases
TTCCGGCACGTTCAGTCGGGCCCCTTCGTGCGCAGTTCGTACCACGCCGAGGCATTCGAGCCAGTTGAAAAAATTTCCTG
AACCAAAAACCTGACCTGAC

Downstream 100 bases:

>100_bases
ACCCTAAAGAGCTGATCTGATGAAACCACCATTCAATGGCACTGTCCTCGTGGCAGGAGCGACCGGCAGAACTGGTCAGT
TGGTTGTCCGGAGACTCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MHTIPAPFQIYAYWAIALIIGLAFFRKDVTAPNPPFDKRRIGLLVFSVVILVLNAYIYSNSTTDGGRMLDPWSALIFSVG
NGIAETFMFYAVFRLGQSLVGKFTQNQWAGFLVGFLFFMSYSGLIHGLFWLNILPEHVVQTSPFKPFFMPTQLLIALSWA
LSFFWYRDLRTVFFLHAVVDLTMIMNVKFSMFP

Sequences:

>Translated_193_residues
MHTIPAPFQIYAYWAIALIIGLAFFRKDVTAPNPPFDKRRIGLLVFSVVILVLNAYIYSNSTTDGGRMLDPWSALIFSVG
NGIAETFMFYAVFRLGQSLVGKFTQNQWAGFLVGFLFFMSYSGLIHGLFWLNILPEHVVQTSPFKPFFMPTQLLIALSWA
LSFFWYRDLRTVFFLHAVVDLTMIMNVKFSMFP
>Mature_193_residues
MHTIPAPFQIYAYWAIALIIGLAFFRKDVTAPNPPFDKRRIGLLVFSVVILVLNAYIYSNSTTDGGRMLDPWSALIFSVG
NGIAETFMFYAVFRLGQSLVGKFTQNQWAGFLVGFLFFMSYSGLIHGLFWLNILPEHVVQTSPFKPFFMPTQLLIALSWA
LSFFWYRDLRTVFFLHAVVDLTMIMNVKFSMFP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22136; Mature: 22136

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTIPAPFQIYAYWAIALIIGLAFFRKDVTAPNPPFDKRRIGLLVFSVVILVLNAYIYSN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
STTDGGRMLDPWSALIFSVGNGIAETFMFYAVFRLGQSLVGKFTQNQWAGFLVGFLFFMS
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSGLIHGLFWLNILPEHVVQTSPFKPFFMPTQLLIALSWALSFFWYRDLRTVFFLHAVVD
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMIMNVKFSMFP
HHHHHHHHHHCCC
>Mature Secondary Structure
MHTIPAPFQIYAYWAIALIIGLAFFRKDVTAPNPPFDKRRIGLLVFSVVILVLNAYIYSN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
STTDGGRMLDPWSALIFSVGNGIAETFMFYAVFRLGQSLVGKFTQNQWAGFLVGFLFFMS
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSGLIHGLFWLNILPEHVVQTSPFKPFFMPTQLLIALSWALSFFWYRDLRTVFFLHAVVD
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMIMNVKFSMFP
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA