| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21673840
Identifier: 21673840
GI number: 21673840
Start: 955460
End: 956899
Strand: Direct
Name: 21673840
Synonym: CT1012
Alternate gene names: NA
Gene position: 955460-956899 (Clockwise)
Preceding gene: 21673839
Following gene: 21673841
Centisome position: 44.34
GC content: 64.03
Gene sequence:
>1440_bases ATGAGTCTGTTCAAGAAAGCGGTAGGGGTCGCTGCCCTCTATTGCCTGCTGGCGATGGGAGGCGAGGTGCGGGCTGCCGA TTCGGGTGCGCCGTACACCGTGAAAGCGGCCTACGAGTCGTTATCACTGCCGGCGGGCGAGTCGATGGGAATGCTGGGAC TGGGCGTGGAGCGTCAATTCAACGAGAATTTCAGCGGTGGCGTCGGAACCTGGACGGCGGTGCGCGGCGAACGGGGCGGT TTCATCACGATCGGCTTTCAGGGCACGGCTCGCGTGCCGCTGTCGGAAACGTTCGGACTCGAAGCGGGGGCTTTCGTTGG CGCGGGTGGAGGCAGGGGCGGCGCTACCTTGAGCGGCGGCGGCCTGATGCTGCGCGGATACACGGGCCTGACGGCTGATC TGGGTGAGCTGGGCCGGATTGGAGCGGGGGTGAGCTATGTCGATTTCCCGAATGGCGGCGCGATCGATTCAACGCAGCCG ACGGTGTTCTACTCCATTCCGTTCGGTTCCTCCTCCCGGCAGTTCGACGGACTCGCTTACGAGCGGAACTCGCTTGCCGT CGTTTCAAAGCTCGTGCGGGTTCGCTCCGGCGCGCGCGATCTTTCGGGCAAGGTGCAGGATGACTTCACCCTGCTCGGCG TCGAGTGGAGAAGTTATTTCGATAACGAGATGTTCGTTCGCTTTGAAGCGGCAGGCGCGGCTGGCGGCAGCAGCACCGGT TACATGCAGGTGCTGGTGGGGGCGGGCTTGCAGATTCCGTTGTCGGACAATTTCTGGATCGACGGCTCCCTCGGCCTTGG CGGCGGTGGCGGCGGAGATGTCGATACCGGTGGCGGTTTTCTGGTCGATGCGGGGGCCGACCTGCGGTGCGCACTTGATG ACGACCTCTTTGCCGCGGCGGGCGTTTCATACCTGAGAGCGCCCAATGGCAGCCTGAGCGCTTTCTGCCCCTCGCTCGAA GTCGGCGGCACCTTTGGCAAGGAGTCACAGAAGCACGACAAGCTTCCGGTCAGGGTTAGGATGGTGAGCCAGCGCTATTT CAACGGCTCTGATGGCTGGCGTACTCACGACGCCGACAAGGATGTTGACAACCTCGGCGTGCAGTTCGACTACTTCGCGA AGCCGTGGGCATACGTGACAGGCCAGGCGCTGGCCGCCTATGACGGTCAGGCGGGCGCGTACATGATTGGCCTGGTTGGC GGCGGCTTGCACCAGACGATTGCCGGGCCGCTGTTTGTCGAGGCGGAAGGCTTGATCGGTGCGGCGGGCGGCGGCGGACT GGCGATGGGTTCCGGACTGGCGTGGCAGGTCAATGGCGGCGTGGGCGTGCAGGTGAGCAAGGATGTGGCGCTGATGGCCA CCCTTGGGCGACTCGATGCTTTCAATGGCCCGTTCAAGGCCGATGTCGTCGGGCTTTCCCTCGCCTTTGGCGGTCGGTAA
Upstream 100 bases:
>100_bases CAAGTCCGGAGCATGATCGCCGCAAGCCGTGGCGGAGTCCGGCATCTGTAAAAATTTTTCTGGGATCGGTTTCATCAATC AAAAGATCGGAGGATCGAGT
Downstream 100 bases:
>100_bases AGCCAGAAGATTTCGTCCATACCAAAAGGAAATAGCCTCTCGACGGAGGCTGTTTCTCGTTCTATGCGGGGTTACTCGAA CGGTTTTGGTTCAGGCGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MSLFKKAVGVAALYCLLAMGGEVRAADSGAPYTVKAAYESLSLPAGESMGMLGLGVERQFNENFSGGVGTWTAVRGERGG FITIGFQGTARVPLSETFGLEAGAFVGAGGGRGGATLSGGGLMLRGYTGLTADLGELGRIGAGVSYVDFPNGGAIDSTQP TVFYSIPFGSSSRQFDGLAYERNSLAVVSKLVRVRSGARDLSGKVQDDFTLLGVEWRSYFDNEMFVRFEAAGAAGGSSTG YMQVLVGAGLQIPLSDNFWIDGSLGLGGGGGGDVDTGGGFLVDAGADLRCALDDDLFAAAGVSYLRAPNGSLSAFCPSLE VGGTFGKESQKHDKLPVRVRMVSQRYFNGSDGWRTHDADKDVDNLGVQFDYFAKPWAYVTGQALAAYDGQAGAYMIGLVG GGLHQTIAGPLFVEAEGLIGAAGGGGLAMGSGLAWQVNGGVGVQVSKDVALMATLGRLDAFNGPFKADVVGLSLAFGGR
Sequences:
>Translated_479_residues MSLFKKAVGVAALYCLLAMGGEVRAADSGAPYTVKAAYESLSLPAGESMGMLGLGVERQFNENFSGGVGTWTAVRGERGG FITIGFQGTARVPLSETFGLEAGAFVGAGGGRGGATLSGGGLMLRGYTGLTADLGELGRIGAGVSYVDFPNGGAIDSTQP TVFYSIPFGSSSRQFDGLAYERNSLAVVSKLVRVRSGARDLSGKVQDDFTLLGVEWRSYFDNEMFVRFEAAGAAGGSSTG YMQVLVGAGLQIPLSDNFWIDGSLGLGGGGGGDVDTGGGFLVDAGADLRCALDDDLFAAAGVSYLRAPNGSLSAFCPSLE VGGTFGKESQKHDKLPVRVRMVSQRYFNGSDGWRTHDADKDVDNLGVQFDYFAKPWAYVTGQALAAYDGQAGAYMIGLVG GGLHQTIAGPLFVEAEGLIGAAGGGGLAMGSGLAWQVNGGVGVQVSKDVALMATLGRLDAFNGPFKADVVGLSLAFGGR >Mature_478_residues SLFKKAVGVAALYCLLAMGGEVRAADSGAPYTVKAAYESLSLPAGESMGMLGLGVERQFNENFSGGVGTWTAVRGERGGF ITIGFQGTARVPLSETFGLEAGAFVGAGGGRGGATLSGGGLMLRGYTGLTADLGELGRIGAGVSYVDFPNGGAIDSTQPT VFYSIPFGSSSRQFDGLAYERNSLAVVSKLVRVRSGARDLSGKVQDDFTLLGVEWRSYFDNEMFVRFEAAGAAGGSSTGY MQVLVGAGLQIPLSDNFWIDGSLGLGGGGGGDVDTGGGFLVDAGADLRCALDDDLFAAAGVSYLRAPNGSLSAFCPSLEV GGTFGKESQKHDKLPVRVRMVSQRYFNGSDGWRTHDADKDVDNLGVQFDYFAKPWAYVTGQALAAYDGQAGAYMIGLVGG GLHQTIAGPLFVEAEGLIGAAGGGGLAMGSGLAWQVNGGVGVQVSKDVALMATLGRLDAFNGPFKADVVGLSLAFGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49120; Mature: 48989
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFKKAVGVAALYCLLAMGGEVRAADSGAPYTVKAAYESLSLPAGESMGMLGLGVERQF CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCEEECCCCHHC NENFSGGVGTWTAVRGERGGFITIGFQGTARVPLSETFGLEAGAFVGAGGGRGGATLSGG CCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCEEECC GLMLRGYTGLTADLGELGRIGAGVSYVDFPNGGAIDSTQPTVFYSIPFGSSSRQFDGLAY CEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE ERNSLAVVSKLVRVRSGARDLSGKVQDDFTLLGVEWRSYFDNEMFVRFEAAGAAGGSSTG CCCCHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEHHHHCCCCEEEEEEECCCCCCCCCC YMQVLVGAGLQIPLSDNFWIDGSLGLGGGGGGDVDTGGGFLVDAGADLRCALDDDLFAAA EEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHH GVSYLRAPNGSLSAFCPSLEVGGTFGKESQKHDKLPVRVRMVSQRYFNGSDGWRTHDADK CCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCC DVDNLGVQFDYFAKPWAYVTGQALAAYDGQAGAYMIGLVGGGLHQTIAGPLFVEAEGLIG CHHHCCEEEECCCCCEEEECCCEEEEECCCCCEEEEEEECCCHHHHHCCCEEEEECCCEE AAGGGGLAMGSGLAWQVNGGVGVQVSKDVALMATLGRLDAFNGPFKADVVGLSLAFGGR ECCCCCEEECCCEEEEECCCEEEEECCCEEEEHHHHHHHCCCCCCEEEEEEEEEEECCC >Mature Secondary Structure SLFKKAVGVAALYCLLAMGGEVRAADSGAPYTVKAAYESLSLPAGESMGMLGLGVERQF CHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCEEECCCCHHC NENFSGGVGTWTAVRGERGGFITIGFQGTARVPLSETFGLEAGAFVGAGGGRGGATLSGG CCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCEEECC GLMLRGYTGLTADLGELGRIGAGVSYVDFPNGGAIDSTQPTVFYSIPFGSSSRQFDGLAY CEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE ERNSLAVVSKLVRVRSGARDLSGKVQDDFTLLGVEWRSYFDNEMFVRFEAAGAAGGSSTG CCCCHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEHHHHCCCCEEEEEEECCCCCCCCCC YMQVLVGAGLQIPLSDNFWIDGSLGLGGGGGGDVDTGGGFLVDAGADLRCALDDDLFAAA EEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHH GVSYLRAPNGSLSAFCPSLEVGGTFGKESQKHDKLPVRVRMVSQRYFNGSDGWRTHDADK CCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCC DVDNLGVQFDYFAKPWAYVTGQALAAYDGQAGAYMIGLVGGGLHQTIAGPLFVEAEGLIG CHHHCCEEEECCCCCEEEECCCEEEEECCCCCEEEEEEECCCHHHHHCCCEEEEECCCEE AAGGGGLAMGSGLAWQVNGGVGVQVSKDVALMATLGRLDAFNGPFKADVVGLSLAFGGR ECCCCCEEECCCEEEEECCCEEEEECCCEEEEHHHHHHHCCCCCCEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA