| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is pheT
Identifier: 21673560
GI number: 21673560
Start: 710961
End: 713393
Strand: Direct
Name: pheT
Synonym: CT0730
Alternate gene names: 21673560
Gene position: 710961-713393 (Clockwise)
Preceding gene: 21673559
Following gene: 21673561
Centisome position: 32.99
GC content: 55.24
Gene sequence:
>2433_bases ATGAAAATCTCCGTCAACTGGCTCAAGGAGTTTGTTCCCTCTCTTTCATTTGATTGTTCTGGACTCGTCGATTACCTGAC CTTTCTTGGTCTCGAAGTTGAAGATGTTTTTGAACAAAAGCTGCCCGACCAGAAGGTGATTGTCGGTAAAATTGTCGAGG TCAGACCCCATCCGAATGCTGACCGGCTTCGGATCTGCATGGTCGATACGGGCGAAGGTGAGCTGCGGCAGATTGTCTGT GGCGCGCCGAACGTCGAGGCTGGCATGATGGTGCCGGTGGCTACCATTGGCGCTGTGCTGACGGCTGTTTCCGGTGAAAC CTTCACCATCAAGCCTGCGAAAATTCGCGGCGAGCACTCGTCCGGGATGATCTGCGCCGCTGATGAACTCGGATTATCGG ATGATCATGATGGTGTGATGGTGCTCGACGAGGCGTGTGAGATTGGCCAGCCGCTTGCCCGCTACCTCGAAACCGACACG GTGCTTGACATCGCTGTGACGCCGAACCGTCCCGATGCGCTTTCGCATCTTGGCGTCGCCCGCGAGCTGGCCGACTGTAA CGAGATTGTCTATCCGCAAGCACCGGTGATCGAGTTCACTCGTGGCGGTGGTCTTATCGAGGTACAGGACGAGGAGTCGT GTCCTTACTACACGGCCACGGTCATCAAGGGCGTGACGGTTGGTCCGTCGCCGCGATGGCTTGCCCGCCGACTCGAACAG ATCGGCCTACGCCCAAAGAACAACATCGTCGATATCACCAACTACATTCTTCATTCGTTTGGCCAGCCGCTGCACGCTTT CGACTATCACCAGCTTGCCGGTAGCCGCATTGTCGTGCGCAGCGACGCCGAGAGCAGCTTCATGGCGCTCAATAAGGTGG AGTACCAGCTCCAGCCAGGTATGACGGTTGTTTGTGACGCGCGTGAGCCGGTGGCTATTGGTGGCGTGATGGGCGGCCTT CATTCGGCGGTTACCGATAAAACCACCGACATTCTGCTCGAAGCTGCGTACTTCAATCCGGCCTCGGTCAGGAAAACCGC CAAGCAGCTTCAGCTCTCTTCTGATTCCTCTTATCGTTTTGAGCGCGGTGTCGATCCGTGCAACGTGAAGCGGGCCGCCG AATACGCCATCGCCATGATTCTTGAAATCGCTGGCGGCAATGTCGATTCCGCCGAGGCGTGGGGCGACATGCCTGCCGCA CAGAAAATCGTGTCACTCAGGCCCAAACGTGTTAATGCTGTGCTCGGCAGTTCGATCACCGCCTCCCGGATGGTTCGATT GCTGGAGAAAATCTGTATCAAGGCGGTCTCGCAAGAGGCTGTGTCGGACGATGTTGATTCTATCGCGTTTTCTGTGCCCT CCTTCCGGGTCGATATCGAACAGGAGATCGACCTGATCGAAGAGGTCGCACGCCTGTACGGGTACAACAATCTGGAACCG GCACCTGTAATGGTTTCCAGCTATCCGGTTAGCCGCAAGGTGCCTGAATATTTTCCCGATTATTTGCGTAGCATCATGAT CGGCCTGAATTTCAGGGAGGTGCTCACCAACCCTCTGATCAGGAAAGCCGAAGCTGACTGCTTCAGCTCGATGCTGGTCA ACGTGCTCAATCCGATCAGTGAAGAGCTCGAAGTGCTTCGCCCGAACCTTGCCCCCTCGCTGCTCAAAGTCGTTGGGTAC AATATGCGGCACGGCAATCGCGAGCTTCGCCTTTTCGAGGTTGCACACGGATTTGAGAAGCAGCCGGAAGCCGGGCGCGG CAACGAGGGGCCACTGTCGGCATTTCTTGAAAAGGAGTTGCTTTCGATGGTGATAACCGGTCGACGTGAACCCAGAAGCT GGAACCGCCAGGACGAGAACGTCGACTTTTACGATCTCAGGGGCGTAGTGGAGATGTTGCTTGAAAAGCTGAACTTACTT GAAAAATCAGCTTTCAATATTTATAATGCTCGAACTATTGGTATTGAAATCACCTCGACGGAAAACGGGAAAACGTCCGT TCTGAAGGCGGGGACGGTTCAGCAGGTCAACCGGGAGGTGCTCGATGTTTTTGGTCTTGATCAGGATGTGTATCTGGCTG AGCTCGATGTTACGCTGCTGGAGCGATGTTTTGAGTCAGGCGTGATCTATGAGCCCCCGTCGAAGTTCCCCGTGGTTGAA AGAGATCTTTCATTCGTGCTTCCCCGTCATATTCCGGCCCAGCGCCTGATCGATCTTGCAAAGGCGAGCGATCCGCGGGT CAGGTCGGTTCGGATTTTCGATGTGTTCGACCGAGGAACAACTCAGGGAGAACCCTCAACGCGAAGCGTGGCGCTTTCGC TTGAGCTTGCCGACAGGTCGGGAACCATGAACGAAGAGGCGATCAGCGCCGTCATCTCGAAGGTGATTGACAATGCCAGG AGTGAACTTGGTGCGGTAATTCGGCAAGTTTGA
Upstream 100 bases:
>100_bases ATTGCGCGGCCTCGGCTGGCATGCTGGCGCATCGGCTCTGCATCGTTCCTGACGATTTTCCGAGATGCTTTTCATGAATG CATTGCACTAATACCCGCCC
Downstream 100 bases:
>100_bases TCCAGCCCGGTTTTATGGATGCAGCAAACGAGCATAATGATCATCAGTTGCTTGCGGGCCTCGAAAAGAATGTGGGGCGG CTTGTGGAGCAGTTGTCCGA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MKISVNWLKEFVPSLSFDCSGLVDYLTFLGLEVEDVFEQKLPDQKVIVGKIVEVRPHPNADRLRICMVDTGEGELRQIVC GAPNVEAGMMVPVATIGAVLTAVSGETFTIKPAKIRGEHSSGMICAADELGLSDDHDGVMVLDEACEIGQPLARYLETDT VLDIAVTPNRPDALSHLGVARELADCNEIVYPQAPVIEFTRGGGLIEVQDEESCPYYTATVIKGVTVGPSPRWLARRLEQ IGLRPKNNIVDITNYILHSFGQPLHAFDYHQLAGSRIVVRSDAESSFMALNKVEYQLQPGMTVVCDAREPVAIGGVMGGL HSAVTDKTTDILLEAAYFNPASVRKTAKQLQLSSDSSYRFERGVDPCNVKRAAEYAIAMILEIAGGNVDSAEAWGDMPAA QKIVSLRPKRVNAVLGSSITASRMVRLLEKICIKAVSQEAVSDDVDSIAFSVPSFRVDIEQEIDLIEEVARLYGYNNLEP APVMVSSYPVSRKVPEYFPDYLRSIMIGLNFREVLTNPLIRKAEADCFSSMLVNVLNPISEELEVLRPNLAPSLLKVVGY NMRHGNRELRLFEVAHGFEKQPEAGRGNEGPLSAFLEKELLSMVITGRREPRSWNRQDENVDFYDLRGVVEMLLEKLNLL EKSAFNIYNARTIGIEITSTENGKTSVLKAGTVQQVNREVLDVFGLDQDVYLAELDVTLLERCFESGVIYEPPSKFPVVE RDLSFVLPRHIPAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSVALSLELADRSGTMNEEAISAVISKVIDNAR SELGAVIRQV
Sequences:
>Translated_810_residues MKISVNWLKEFVPSLSFDCSGLVDYLTFLGLEVEDVFEQKLPDQKVIVGKIVEVRPHPNADRLRICMVDTGEGELRQIVC GAPNVEAGMMVPVATIGAVLTAVSGETFTIKPAKIRGEHSSGMICAADELGLSDDHDGVMVLDEACEIGQPLARYLETDT VLDIAVTPNRPDALSHLGVARELADCNEIVYPQAPVIEFTRGGGLIEVQDEESCPYYTATVIKGVTVGPSPRWLARRLEQ IGLRPKNNIVDITNYILHSFGQPLHAFDYHQLAGSRIVVRSDAESSFMALNKVEYQLQPGMTVVCDAREPVAIGGVMGGL HSAVTDKTTDILLEAAYFNPASVRKTAKQLQLSSDSSYRFERGVDPCNVKRAAEYAIAMILEIAGGNVDSAEAWGDMPAA QKIVSLRPKRVNAVLGSSITASRMVRLLEKICIKAVSQEAVSDDVDSIAFSVPSFRVDIEQEIDLIEEVARLYGYNNLEP APVMVSSYPVSRKVPEYFPDYLRSIMIGLNFREVLTNPLIRKAEADCFSSMLVNVLNPISEELEVLRPNLAPSLLKVVGY NMRHGNRELRLFEVAHGFEKQPEAGRGNEGPLSAFLEKELLSMVITGRREPRSWNRQDENVDFYDLRGVVEMLLEKLNLL EKSAFNIYNARTIGIEITSTENGKTSVLKAGTVQQVNREVLDVFGLDQDVYLAELDVTLLERCFESGVIYEPPSKFPVVE RDLSFVLPRHIPAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSVALSLELADRSGTMNEEAISAVISKVIDNAR SELGAVIRQV >Mature_810_residues MKISVNWLKEFVPSLSFDCSGLVDYLTFLGLEVEDVFEQKLPDQKVIVGKIVEVRPHPNADRLRICMVDTGEGELRQIVC GAPNVEAGMMVPVATIGAVLTAVSGETFTIKPAKIRGEHSSGMICAADELGLSDDHDGVMVLDEACEIGQPLARYLETDT VLDIAVTPNRPDALSHLGVARELADCNEIVYPQAPVIEFTRGGGLIEVQDEESCPYYTATVIKGVTVGPSPRWLARRLEQ IGLRPKNNIVDITNYILHSFGQPLHAFDYHQLAGSRIVVRSDAESSFMALNKVEYQLQPGMTVVCDAREPVAIGGVMGGL HSAVTDKTTDILLEAAYFNPASVRKTAKQLQLSSDSSYRFERGVDPCNVKRAAEYAIAMILEIAGGNVDSAEAWGDMPAA QKIVSLRPKRVNAVLGSSITASRMVRLLEKICIKAVSQEAVSDDVDSIAFSVPSFRVDIEQEIDLIEEVARLYGYNNLEP APVMVSSYPVSRKVPEYFPDYLRSIMIGLNFREVLTNPLIRKAEADCFSSMLVNVLNPISEELEVLRPNLAPSLLKVVGY NMRHGNRELRLFEVAHGFEKQPEAGRGNEGPLSAFLEKELLSMVITGRREPRSWNRQDENVDFYDLRGVVEMLLEKLNLL EKSAFNIYNARTIGIEITSTENGKTSVLKAGTVQQVNREVLDVFGLDQDVYLAELDVTLLERCFESGVIYEPPSKFPVVE RDLSFVLPRHIPAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSVALSLELADRSGTMNEEAISAVISKVIDNAR SELGAVIRQV
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Homo sapiens, GI124028525, Length=177, Percent_Identity=28.2485875706215, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1788006, Length=829, Percent_Identity=33.4137515078408, Blast_Score=390, Evalue=1e-109, Organism=Drosophila melanogaster, GI21355211, Length=414, Percent_Identity=25.8454106280193, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYFB_CHLTE (Q8KEF9)
Other databases:
- EMBL: AE006470 - RefSeq: NP_661625.1 - ProteinModelPortal: Q8KEF9 - SMR: Q8KEF9 - GeneID: 1006364 - GenomeReviews: AE006470_GR - KEGG: cte:CT0730 - NMPDR: fig|194439.1.peg.719 - TIGR: CT0730 - HOGENOM: HBG399638 - OMA: ELERKCK - ProtClustDB: PRK00629 - BioCyc: CTEP194439:CT_0730-MONOMER - BRENDA: 6.1.1.20 - GO: GO:0005737 - HAMAP: MF_00283 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 - Gene3D: G3DSA:3.50.40.10 - Gene3D: G3DSA:3.30.56.20 - Gene3D: G3DSA:3.30.70.380 - Gene3D: G3DSA:2.40.50.140 - SMART: SM00873 - SMART: SM00874 - SMART: SM00896 - TIGRFAMs: TIGR00472
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 89371; Mature: 89371
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISVNWLKEFVPSLSFDCSGLVDYLTFLGLEVEDVFEQKLPDQKVIVGKIVEVRPHPNA CEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEEECCCCCC DRLRICMVDTGEGELRQIVCGAPNVEAGMMVPVATIGAVLTAVSGETFTIKPAKIRGEHS CCEEEEEEECCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEECCCCC SGMICAADELGLSDDHDGVMVLDEACEIGQPLARYLETDTVLDIAVTPNRPDALSHLGVA CCEEEEHHCCCCCCCCCCEEEEHHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH RELADCNEIVYPQAPVIEFTRGGGLIEVQDEESCPYYTATVIKGVTVGPSPRWLARRLEQ HHHHCCHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCHHHHHHHHHH IGLRPKNNIVDITNYILHSFGQPLHAFDYHQLAGSRIVVRSDAESSFMALNKVEYQLQPG HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHEEEEECCC MTVVCDAREPVAIGGVMGGLHSAVTDKTTDILLEAAYFNPASVRKTAKQLQLSSDSSYRF CEEEECCCCCEEHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHH ERGVDPCNVKRAAEYAIAMILEIAGGNVDSAEAWGDMPAAQKIVSLRPKRVNAVLGSSIT HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHCCCHH ASRMVRLLEKICIKAVSQEAVSDDVDSIAFSVPSFRVDIEQEIDLIEEVARLYGYNNLEP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCEEECHHHHHHHHHHHHHHHCCCCCCC APVMVSSYPVSRKVPEYFPDYLRSIMIGLNFREVLTNPLIRKAEADCFSSMLVNVLNPIS CCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH EELEVLRPNLAPSLLKVVGYNMRHGNRELRLFEVAHGFEKQPEAGRGNEGPLSAFLEKEL HHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH LSMVITGRREPRSWNRQDENVDFYDLRGVVEMLLEKLNLLEKSAFNIYNARTIGIEITST HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECEEEEEEEEEEC ENGKTSVLKAGTVQQVNREVLDVFGLDQDVYLAELDVTLLERCFESGVIYEPPSKFPVVE CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCEECCCCCCCCHH RDLSFVLPRHIPAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSVALSLELADRS CCHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCC GTMNEEAISAVISKVIDNARSELGAVIRQV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKISVNWLKEFVPSLSFDCSGLVDYLTFLGLEVEDVFEQKLPDQKVIVGKIVEVRPHPNA CEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEEECCCCCC DRLRICMVDTGEGELRQIVCGAPNVEAGMMVPVATIGAVLTAVSGETFTIKPAKIRGEHS CCEEEEEEECCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEECCCCC SGMICAADELGLSDDHDGVMVLDEACEIGQPLARYLETDTVLDIAVTPNRPDALSHLGVA CCEEEEHHCCCCCCCCCCEEEEHHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH RELADCNEIVYPQAPVIEFTRGGGLIEVQDEESCPYYTATVIKGVTVGPSPRWLARRLEQ HHHHCCHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCHHHHHHHHHH IGLRPKNNIVDITNYILHSFGQPLHAFDYHQLAGSRIVVRSDAESSFMALNKVEYQLQPG HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHEEEEECCC MTVVCDAREPVAIGGVMGGLHSAVTDKTTDILLEAAYFNPASVRKTAKQLQLSSDSSYRF CEEEECCCCCEEHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHH ERGVDPCNVKRAAEYAIAMILEIAGGNVDSAEAWGDMPAAQKIVSLRPKRVNAVLGSSIT HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHCCCHH ASRMVRLLEKICIKAVSQEAVSDDVDSIAFSVPSFRVDIEQEIDLIEEVARLYGYNNLEP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCEEECHHHHHHHHHHHHHHHCCCCCCC APVMVSSYPVSRKVPEYFPDYLRSIMIGLNFREVLTNPLIRKAEADCFSSMLVNVLNPIS CCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH EELEVLRPNLAPSLLKVVGYNMRHGNRELRLFEVAHGFEKQPEAGRGNEGPLSAFLEKEL HHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH LSMVITGRREPRSWNRQDENVDFYDLRGVVEMLLEKLNLLEKSAFNIYNARTIGIEITST HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECEEEEEEEEEEC ENGKTSVLKAGTVQQVNREVLDVFGLDQDVYLAELDVTLLERCFESGVIYEPPSKFPVVE CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCEECCCCCCCCHH RDLSFVLPRHIPAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSVALSLELADRS CCHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCC GTMNEEAISAVISKVIDNARSELGAVIRQV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12093901