Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 21673476

GI number: 21673476

Start: 642654

End: 643052

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: CT0644

Alternate gene names: 21673476

Gene position: 643052-642654 (Counterclockwise)

Preceding gene: 21673478

Following gene: 21673475

Centisome position: 29.84

GC content: 50.13

Gene sequence:

>399_bases
ATGTTGATGAAAATAGCGAAAGACCCAATGAGACTGTTCGATGATATCTGGAGCGGCAGCCAGATGGCTGTAGCTCCGTC
ATTCAAGGTCGATATTTCTGAAGACGAGAATGCCTACCATCTCGACGCCGAACTTCCGGGCATTGCAAAGGAACAGATCG
CACTGAACATTGAGGATGACGTACTCACCATCAAGGCTGAACGCACGCACAAAGAGGAGGAGAAAAAGAAGAATTACCAC
AGGGTAGAAAGAACCTACGGCTCATTCTCGCGCAGTTTCAATATCGGCGAGATCATCGACCAGGAGCACATCGGCGCGAC
CTACGACAACGGCGTGCTGCACGTCACACTGCCGAAGACCCAGCCGGCAAAGAAAACCAAGGAAATTCCAATCAACTAA

Upstream 100 bases:

>100_bases
AACGCTTTGGCACGTCTTTTGATGTTTCAATAACAGAGGTGATCAAGGATCGCCACAAACCAAAACGACTGAAAACAAAC
AAACCATAACGGAGAACACC

Downstream 100 bases:

>100_bases
CCGATTCTCCCGAACGCCTCCTGACAGAAAGGAGGCGTTCAACGTAGATCAAAACCATTAAAAAAAGGAATTACACATCA
TGGGTAAAATTATCGGAATC

Product: HSP20 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MLMKIAKDPMRLFDDIWSGSQMAVAPSFKVDISEDENAYHLDAELPGIAKEQIALNIEDDVLTIKAERTHKEEEKKKNYH
RVERTYGSFSRSFNIGEIIDQEHIGATYDNGVLHVTLPKTQPAKKTKEIPIN

Sequences:

>Translated_132_residues
MLMKIAKDPMRLFDDIWSGSQMAVAPSFKVDISEDENAYHLDAELPGIAKEQIALNIEDDVLTIKAERTHKEEEKKKNYH
RVERTYGSFSRSFNIGEIIDQEHIGATYDNGVLHVTLPKTQPAKKTKEIPIN
>Mature_132_residues
MLMKIAKDPMRLFDDIWSGSQMAVAPSFKVDISEDENAYHLDAELPGIAKEQIALNIEDDVLTIKAERTHKEEEKKKNYH
RVERTYGSFSRSFNIGEIIDQEHIGATYDNGVLHVTLPKTQPAKKTKEIPIN

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: 686 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15054; Mature: 15054

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMKIAKDPMRLFDDIWSGSQMAVAPSFKVDISEDENAYHLDAELPGIAKEQIALNIEDD
CCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEECCCCCCCCCCEEEEEECCC
VLTIKAERTHKEEEKKKNYHRVERTYGSFSRSFNIGEIIDQEHIGATYDNGVLHVTLPKT
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEECCC
QPAKKTKEIPIN
CCCCCCCCCCCC
>Mature Secondary Structure
MLMKIAKDPMRLFDDIWSGSQMAVAPSFKVDISEDENAYHLDAELPGIAKEQIALNIEDD
CCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEECCCCCCCCCCEEEEEECCC
VLTIKAERTHKEEEKKKNYHRVERTYGSFSRSFNIGEIIDQEHIGATYDNGVLHVTLPKT
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEECCC
QPAKKTKEIPIN
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA