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The map label for this gene is pscD

Identifier: 21673473

GI number: 21673473

Start: 639319

End: 639750

Strand: Reverse

Name: pscD

Synonym: CT0641

Alternate gene names: 21673473

Gene position: 639750-639319 (Counterclockwise)

Preceding gene: 21673475

Following gene: 21673471

Centisome position: 29.69

GC content: 52.31

Gene sequence:

>432_bases
ATGCAACCTCAGCTCAGCCGCCCACAAACCGCATCCAACCAGGTTCGCAAAGCTGTTTCCGGCCCATGGTCAGGAAATGC
GGTACACAAAGCCGAAAAGTATTTCATTACATCAGCAAAACGCGATCGCGACGGCAAGCTTCAGATCGAGCTTGTTCCGG
CTTCTGGCCGCCGCAAGCTGTCGCCAACCCCGGAGATGATCCGCCGGCTCATCGATGGCGAAATCGAGATTTACATCCTC
ACCACCCAGCCTGACATCGCCATCGACATGAACAAGGAGATCATCGACATGGAAAACCGCTATGTCATTGATTTTGACAA
ACGCGGCGTCAAGTGGACGATGCGGGAGATTCCTGTTTTCTACCACGAAGGCAAGGGGCTGTGCGTGGAGCTTCATAACA
AGATTTACACCCTCGACCAGTTTTTCAAATAA

Upstream 100 bases:

>100_bases
ATGAAATCTTTTTTTATTTGCAGACCTTTTGCTAACTTGAACCAACTAAGGTTTACACCACCAAGAGGTGCCCAGTCAGC
CAATCAAACCGAGCAGAACC

Downstream 100 bases:

>100_bases
ACAAGCTTGTTTCAGCACCTCTCTCAAGCAAATCTGTTCAAAAAGAGCCATGTACCAGCGTGGCTCTTTTTTTGCCCATA
AAAAACGCCCGGTGATGTCC

Product: photosystem P840 reaction center protein PscD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQPQLSRPQTASNQVRKAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKLSPTPEMIRRLIDGEIEIYIL
TTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVFYHEGKGLCVELHNKIYTLDQFFK

Sequences:

>Translated_143_residues
MQPQLSRPQTASNQVRKAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKLSPTPEMIRRLIDGEIEIYIL
TTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVFYHEGKGLCVELHNKIYTLDQFFK
>Mature_143_residues
MQPQLSRPQTASNQVRKAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKLSPTPEMIRRLIDGEIEIYIL
TTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVFYHEGKGLCVELHNKIYTLDQFFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSCD_CHLTE (Q8KEP5)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_661538.1
- GeneID:   1007160
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT0641
- NMPDR:   fig|194439.1.peg.632
- TIGR:   CT0641
- HOGENOM:   HBG405752
- OMA:   ENRYVID
- ProtClustDB:   CLSK637409
- BioCyc:   CTEP194439:CT_0641-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR019608

Pfam domain/function: PF10657 RC-P840_PscD

EC number: NA

Molecular weight: Translated: 16607; Mature: 16607

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQLSRPQTASNQVRKAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKL
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCC
SPTPEMIRRLIDGEIEIYILTTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVF
CCCHHHHHHHHCCCEEEEEEECCCCEEEECCCEEEECCCCEEEEECCCCCEEEHCCCCEE
YHEGKGLCVELHNKIYTLDQFFK
EECCCCEEEEECCEEEEHHHHCC
>Mature Secondary Structure
MQPQLSRPQTASNQVRKAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKL
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCC
SPTPEMIRRLIDGEIEIYILTTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVF
CCCHHHHHHHHCCCEEEEEEECCCCEEEECCCEEEECCCCEEEEECCCCCEEEHCCCCEE
YHEGKGLCVELHNKIYTLDQFFK
EECCCCEEEEECCEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901