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The map label for this gene is rfaH [C]

Identifier: 21673456

GI number: 21673456

Start: 624639

End: 625241

Strand: Reverse

Name: rfaH [C]

Synonym: CT0622

Alternate gene names: 21673456

Gene position: 625241-624639 (Counterclockwise)

Preceding gene: 21673458

Following gene: 21673455

Centisome position: 29.01

GC content: 54.39

Gene sequence:

>603_bases
ATGACCAATGCGCTTAAAAAGGATGGCTGCTGGTATGCCGTTTACGTTCGCTCCCGCTACGAGAAAAAAGTGCACCAGTA
CCTCCTGGAAAAGGGACTTTCCAGCTTTCTCCCTTTGATTGAAACGCTCAGGCAGTGGAGCGACAGGAAAAAGAGGGTCG
AAGAGCCGCTCATCAGGGGTTACGTTTTCGTGAATATCAACTATCACAAAGAGCATGTGCATGTGCTCGAAACCGATGGC
GTGGTGAAGTTTATCGGTATCGGCAAGACGCCGTCGGTGATTTCCGAGCGCGATATCGACTGGCTGAAGCGCCTCGCTCA
CGAACCCGACGCGATTGGCGAGACTGTGATTTCGATTCCTGTCGGCAAGAAGGTTCGCGTGCTGGCCGGGCCGTTCAAAG
ATATGGAAGGCGTGGTCAAAAAAGAGGGTCGGGAAGAGCGGCTCTTGGTCTATTTCGACAGCATCATGCAGGGCGTGGAA
ATCACGATTTCGCCGGAGCTGCTCGCGCCAATTGAAAAGGGCGCGTCCGGGCAGGCGGTCGAAGGGAGCAAAACCGGCGA
CCATGAGGTAGAGTCTGCTATCAGGCATTTGGCTCACTCCTGA

Upstream 100 bases:

>100_bases
TATAAATGATTATTTGGTATTTGCTTGCATCGCCAGACCAAGGATAAGACGGTTCAATGGCGTACATTCCAGCTGAATAC
AACTACTTGATTTGTTTGCG

Downstream 100 bases:

>100_bases
GTTGCAAGCATGAGCGCCCAAAACCCCTTGTCCGGCGCAGGATCACTCGATGGGTCGCTTCACCGGATTTTCGGATTCCG
CTCCTTTCGGCCCAACCAGG

Product: NusG/RfaH family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcription Antitermination Protein NusG; Nusg Antitermination Factor; NGN Domain Protein; Transcription Antiterminator; Transcription Termination Factor NusG Domain Protein; Transcriptional Antiterminator; Transcriptional Activator RfaH; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antitermination Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTNALKKDGCWYAVYVRSRYEKKVHQYLLEKGLSSFLPLIETLRQWSDRKKRVEEPLIRGYVFVNINYHKEHVHVLETDG
VVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIPVGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQGVE
ITISPELLAPIEKGASGQAVEGSKTGDHEVESAIRHLAHS

Sequences:

>Translated_200_residues
MTNALKKDGCWYAVYVRSRYEKKVHQYLLEKGLSSFLPLIETLRQWSDRKKRVEEPLIRGYVFVNINYHKEHVHVLETDG
VVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIPVGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQGVE
ITISPELLAPIEKGASGQAVEGSKTGDHEVESAIRHLAHS
>Mature_199_residues
TNALKKDGCWYAVYVRSRYEKKVHQYLLEKGLSSFLPLIETLRQWSDRKKRVEEPLIRGYVFVNINYHKEHVHVLETDGV
VKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIPVGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQGVEI
TISPELLAPIEKGASGQAVEGSKTGDHEVESAIRHLAHS

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22646; Mature: 22515

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNALKKDGCWYAVYVRSRYEKKVHQYLLEKGLSSFLPLIETLRQWSDRKKRVEEPLIRG
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
YVFVNINYHKEHVHVLETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP
EEEEEEEECCCEEEEEECCCEEEEEECCCCCCHHHHCCHHHHHHHHCCCCHHCCEEEECC
VGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQGVEITISPELLAPIEKGASGQAV
CCCEEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHHCCCEEEECHHHHHHHHCCCCCCCC
EGSKTGDHEVESAIRHLAHS
CCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TNALKKDGCWYAVYVRSRYEKKVHQYLLEKGLSSFLPLIETLRQWSDRKKRVEEPLIRG
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
YVFVNINYHKEHVHVLETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP
EEEEEEEECCCEEEEEECCCEEEEEECCCCCCHHHHCCHHHHHHHHCCCCHHCCEEEECC
VGKKVRVLAGPFKDMEGVVKKEGREERLLVYFDSIMQGVEITISPELLAPIEKGASGQAV
CCCEEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHHCCCEEEECHHHHHHHHCCCCCCCC
EGSKTGDHEVESAIRHLAHS
CCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA