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The map label for this gene is radC [C]

Identifier: 21673446

GI number: 21673446

Start: 612066

End: 612734

Strand: Reverse

Name: radC [C]

Synonym: CT0611

Alternate gene names: 21673446

Gene position: 612734-612066 (Counterclockwise)

Preceding gene: 21673447

Following gene: 21673444

Centisome position: 28.43

GC content: 54.86

Gene sequence:

>669_bases
ATGCGCATTCACGACATCGATCCCGACAATCGTCCGAGGGAGCGGTTTCTCCGTTCCGGCAAGGAGTCCCTCAGCCCGGC
GGAACTGCTGGCGCTTATTCTCCGCTCCGGCACAGCGGGGCTGAATATCATTGACACCTGCAACAAGCTCATCTCGGAGC
ACGGTCTCGAACGCCTCGCTGACCTGTCGATTCAGGAGCTGCAGAAAACGCCGGGCATCGGCGAAGCCAAGGCAATGCAG
ATTGCGGCAATCTTCGAGCTTCAGCGACGACTGCACTTTGCACGCAACATGAACCTGAAAGTAAAGGGCGCGCGTGACGT
GTTTGAGTACATGAAAGGAAGAATCCCGGATGAAACCAAAGAGCATCTGTTCGTGCTTTTCCTGAGCACGAAAAACCAGA
TTCTGAGACACGAAACCATTACCATCGGAACACTCACCGCTTCGCTCATCCACCCGAGAGAGATATTCAAGGCGGCGATC
CGCGAAAGTGCTCACTCGATCATTCTGGTGCACAACCATCCGTCAGGCGACGTGCAACCGAGCAACGCCGACAAACAGGT
CACGTCGATCCTGAAAAAGGCCGGAGACCTTCTCCAGATCGAATTGCTCGACCATGTGATCGTTGGAAACAATGACTGGT
TCAGCTTCAGGGATCACGCCCTGCTTTGA

Upstream 100 bases:

>100_bases
GCCGAAAATGTCGGCAGCACACCCATCTCTGCTTGCAGCTATCGCCCCGTCAGGCTTATCTTGAGCATATTATTCACTCC
TGCCCCCTACAGGAAACATC

Downstream 100 bases:

>100_bases
AGGGTTTTGACCCGGTAAACTCTCGAAAGAATTACGATCTCAAAATCGTAGTTTCTGCATTTGGTCTGCTGGATCAAAAA
AAAGAGATTGTTGGAAAATA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHGLERLADLSIQELQKTPGIGEAKAMQ
IAAIFELQRRLHFARNMNLKVKGARDVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAI
RESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFRDHALL

Sequences:

>Translated_222_residues
MRIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHGLERLADLSIQELQKTPGIGEAKAMQ
IAAIFELQRRLHFARNMNLKVKGARDVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAI
RESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFRDHALL
>Mature_222_residues
MRIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHGLERLADLSIQELQKTPGIGEAKAMQ
IAAIFELQRRLHFARNMNLKVKGARDVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAI
RESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFRDHALL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=218, Percent_Identity=32.1100917431193, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=40.495867768595, Blast_Score=103, Evalue=6e-24,
Organism=Escherichia coli, GI1788312, Length=153, Percent_Identity=37.2549019607843, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI2367100, Length=116, Percent_Identity=40.5172413793103, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y611_CHLTE (Q8KES1)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_661511.1
- PDB:   2QLC
- PDBsum:   2QLC
- ProteinModelPortal:   Q8KES1
- SMR:   Q8KES1
- GeneID:   1006829
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT0611
- NMPDR:   fig|194439.1.peg.605
- TIGR:   CT0611
- HOGENOM:   HBG751042
- OMA:   GRTHEVF
- ProtClustDB:   PRK00024
- BioCyc:   CTEP194439:CT_0611-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25057; Mature: 25057

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHGLERLA
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DLSIQELQKTPGIGEAKAMQIAAIFELQRRLHFARNMNLKVKGARDVFEYMKGRIPDETK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCC
EHLFVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQP
CEEEEEEECCCCHHHHHHEEEEHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC
SNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFRDHALL
CCCHHHHHHHHHHCCCEEEHEEHHHHEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHGLERLA
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DLSIQELQKTPGIGEAKAMQIAAIFELQRRLHFARNMNLKVKGARDVFEYMKGRIPDETK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCC
EHLFVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQP
CEEEEEEECCCCHHHHHHEEEEHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC
SNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFRDHALL
CCCHHHHHHHHHHCCCEEEHEEHHHHEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901