| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is lptD [H]
Identifier: 21673358
GI number: 21673358
Start: 528421
End: 531312
Strand: Direct
Name: lptD [H]
Synonym: CT0523
Alternate gene names: 21673358
Gene position: 528421-531312 (Clockwise)
Preceding gene: 21673344
Following gene: 21673360
Centisome position: 24.52
GC content: 54.98
Gene sequence:
>2892_bases ATGAGTTGTTCCGGAGAGGTATCGATTAAGGAGAAAGGTTTTATATATTCATGTTCTGATTTGCATGACGAACATCATCA GCGCCCGCTAACCCAGCATGATCCGCCCGTGAAATTCACCAAGTCAATCAAACTTCTGACTCTGTTGCTCCTCGTCCAGT CTTTCGAGGGGATTTTGCCGCTGCGTGCGGGTGAAAGTGCATCGAAACCGCAAAAAGCAAAAGATGGCGCGTTGCCCGAC AGCTTGTTGGAAAAGCGTGAGGATCTTGACTCGACTGTTGTGTACACGGCACGGGATTCGCTGATCTACAACGTCAGCAA GCGTACTGCCGACCTGTTCGGCAAGGCGAAAGTCAATTACAAGGACAGCCGCATCGAAGGCCCCAGAATCACCATTGAAC AGGCGACCTCTACGGCGCGCGCCACGGCTTCACGCGACTCTCTTGGCCGTCCAGCCGAGCTTCCCGTCTATACCGGCAAG GACGGATCGTTCAGCGCCGAAACGATAGCCTACAACTACAAAACCAGAATCGGCACGGCGTCGGATATGTCGTCGAAGAG CGATCGGGATATCTATTCCGGAGGGAGCGATCAGGCTATCTATTCAGGCAAGGAGGTCAAGCGTATGCCCTCCGGAGAAC TTTATATCGAGGATGGTGTCTATACGACCTGCGACCTCGAAGAGCCGCACTACTGGTTCGCGGGCAAGCACATGAAAATC ATTCCGGGAGAACGCCTCATTTCCCGGCCGTTCGTGATGTACATTCATCCGGAAATCTTCCACATGCGCCTGCCGGTGTT GCCGGTCATGTATTTGCCCTACATGTCGGCCCCGATCTCCAACAAGCGCGCCTCTGGCTTTCTGTTTCCGAGGTTCGGCA ACAGTGGCGACATGGGCAGTTACTTTTCGAATCTTGGCTACTTCTGGGCGATTAACGATTATGCAGACCTGCGGCTTGAC GGCGATATTGCGTTCAAGGGAGGCTGGCGGCTTGGTGAGCGGTTCCGTTACAAAAACGGTGATCGCTACAGCGGTTCGAT TTCAGGAGAGTATGCCAGGATTATTCTGAACAGCCCCGGCGATTCCAATTATGCCCGATACATCAACCGGGATTTACGGA TCGAGCATCACCAGCAGTTCGACCCTACCGCCGTGCTCGATGTCAATCTTCAGTTTCTGGGCGGCGATCGCTACTATTAC GGCTACACCTCGGTCGATCCTGAAAACCTCGTGACCGATCAGGCGACTTCGTATGCATCGTTCACAAAATCTTGGGACGA GAACAACCGGGTGCTGCTTGGCGGCTACCAGCGGGTGGACAATCTCTCCACCGACGAGCTGACCCAGAGGGTGACCCTGT CGCTCTACCAGAACCGCATCTACCCGTTCCGCCCGAGGCTCTCTTCATCGTCATCGGAATCACCTGGCTGGAGTTCGCGC CTATTTGTGCAGCCGACCCTGTCAGGCAGCGGTCAGTTCGATGCTGCTGGCGGAGTCAATACCGATTTTTACACGGGCAA TGCCGGGCTGGAGCTGGGCTATCTGCAAGATTTTTCGCCAGGTAACCGGGCGCTGTTTACACAGGGGCTCAACATGCAGG CTCTTCGTAAAACAATAACCGGCGAGGATGACCTGAACGCCACCAGCGTGCAGCTTCCTTTCAAGATCCAGTCCACGCTG TTCAAGTACCTGCACCTGACTCCGGCACTGACCTTTACCCAGTACCGCGTCAACAGCACGGTCAACAAGTATTACGACCA CATCGCTGGCAAAGTGGTGACGCAAACCATCAACGATTCCGACAGTTACGCCACGACGGTCTTTTCGCTCGACGCGCAGA CGCGCCTTTACGGGGTGATGAACACCGGTTTTCTCGACAAGCTTGTCGGCCTTACCGCCATCCGTCACGTTTTCATTCCG ACCGTTTCGTTCATTTACAATCCCGATTATACGGGGAGCGGTTACGGTATTTACGGCTCCTATTACGATCCGGTGCAGAT GAAAAATGTGCAGTACAACCGGTTCGGGGAGTCGCTTTACGCTGATGTGCCTGAAAAGCGGACCTTTGTCGGCCTGAGTC TCCAGAACATTTTTCAGGGCAAGTTCCGGAGCAAAAAGGTGTCGAACGAAGATGGCAGTAACGCCGGAGCCGGATATAAA ACGGTGCAACTGCTCTCCCTGACGGCCTCGTCCGGGTACAATTTTGCCGCCGACTCGTTTCCCATCGCGCCGCTGGTGCT GACGGCGTCGAGCAATGCCTTTGCCCCCGCGCTGATGTTCAGCGCCGGTGCGACCTACGACTTCTATACCTACGATCCAG CAACCGGCGATCGGGTGAATAAGCTCGCCATGGACGACGGCAAGGGCCTGCTCCGCTTTGTCAACGGGTTCCTCAACATG AGCGTGAGCGTGAGCGGCAGCCTGCACACCTCGTATGCCTCCCATGATGAAAGGGATGGCGAGATGTCACTTGTCCGGGA GAAGGCTTTGCCGGTCGAGCAGGCGATCTACAAGGAGCGGTTCAATAGCGATGAACGGACCAAATTCAGTGCATCGTTAC CCTGGTCGCTACGCATGTCGCTTTATTTGATCAGCGACAAGAGTAATCCGCTTGATCCTTCCTCTGCTGCGCTGCTTAAC ACCGCGGCCCGGCTCTCTCTTTCGAGAAACTGGCAGGTTGGCCTTAATACCGGCTACGATCTCAGAAACAGCGAATTCGT CTATCCCGCGCTTATGCTCGACAGGGATTTGCACGATTTCTGGTTCAGCGCCCAGTGGGTACCATCGGGCGAGCACAAGG GCTATCTGTTCCAGATCGCCATGAAACCGGCCAACCTCAAGTACCTGAAGCTGAAGGCGGGAAGCGGCCATATTGTTCAG TCTCCGGAGTAG
Upstream 100 bases:
>100_bases CCCGTTGCCGGATGTCGGTGCAGGGTATTTGTTACAAAATATAGAAACCTTTCGATCAATTCTCCATCTGCCGGAGCCAT TCTCTTTCCGTTTCCGCGGC
Downstream 100 bases:
>100_bases GCTGGGGCAGTATCAGCTACAGAACTCTGTTGTTACTCCAGCCGCTGGAGAAGCTGCGCGAGGCGGTTGTTGAAGGTCTC GTGCGCATCGTGATGGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 963; Mature: 962
Protein sequence:
>963_residues MSCSGEVSIKEKGFIYSCSDLHDEHHQRPLTQHDPPVKFTKSIKLLTLLLLVQSFEGILPLRAGESASKPQKAKDGALPD SLLEKREDLDSTVVYTARDSLIYNVSKRTADLFGKAKVNYKDSRIEGPRITIEQATSTARATASRDSLGRPAELPVYTGK DGSFSAETIAYNYKTRIGTASDMSSKSDRDIYSGGSDQAIYSGKEVKRMPSGELYIEDGVYTTCDLEEPHYWFAGKHMKI IPGERLISRPFVMYIHPEIFHMRLPVLPVMYLPYMSAPISNKRASGFLFPRFGNSGDMGSYFSNLGYFWAINDYADLRLD GDIAFKGGWRLGERFRYKNGDRYSGSISGEYARIILNSPGDSNYARYINRDLRIEHHQQFDPTAVLDVNLQFLGGDRYYY GYTSVDPENLVTDQATSYASFTKSWDENNRVLLGGYQRVDNLSTDELTQRVTLSLYQNRIYPFRPRLSSSSSESPGWSSR LFVQPTLSGSGQFDAAGGVNTDFYTGNAGLELGYLQDFSPGNRALFTQGLNMQALRKTITGEDDLNATSVQLPFKIQSTL FKYLHLTPALTFTQYRVNSTVNKYYDHIAGKVVTQTINDSDSYATTVFSLDAQTRLYGVMNTGFLDKLVGLTAIRHVFIP TVSFIYNPDYTGSGYGIYGSYYDPVQMKNVQYNRFGESLYADVPEKRTFVGLSLQNIFQGKFRSKKVSNEDGSNAGAGYK TVQLLSLTASSGYNFAADSFPIAPLVLTASSNAFAPALMFSAGATYDFYTYDPATGDRVNKLAMDDGKGLLRFVNGFLNM SVSVSGSLHTSYASHDERDGEMSLVREKALPVEQAIYKERFNSDERTKFSASLPWSLRMSLYLISDKSNPLDPSSAALLN TAARLSLSRNWQVGLNTGYDLRNSEFVYPALMLDRDLHDFWFSAQWVPSGEHKGYLFQIAMKPANLKYLKLKAGSGHIVQ SPE
Sequences:
>Translated_963_residues MSCSGEVSIKEKGFIYSCSDLHDEHHQRPLTQHDPPVKFTKSIKLLTLLLLVQSFEGILPLRAGESASKPQKAKDGALPD SLLEKREDLDSTVVYTARDSLIYNVSKRTADLFGKAKVNYKDSRIEGPRITIEQATSTARATASRDSLGRPAELPVYTGK DGSFSAETIAYNYKTRIGTASDMSSKSDRDIYSGGSDQAIYSGKEVKRMPSGELYIEDGVYTTCDLEEPHYWFAGKHMKI IPGERLISRPFVMYIHPEIFHMRLPVLPVMYLPYMSAPISNKRASGFLFPRFGNSGDMGSYFSNLGYFWAINDYADLRLD GDIAFKGGWRLGERFRYKNGDRYSGSISGEYARIILNSPGDSNYARYINRDLRIEHHQQFDPTAVLDVNLQFLGGDRYYY GYTSVDPENLVTDQATSYASFTKSWDENNRVLLGGYQRVDNLSTDELTQRVTLSLYQNRIYPFRPRLSSSSSESPGWSSR LFVQPTLSGSGQFDAAGGVNTDFYTGNAGLELGYLQDFSPGNRALFTQGLNMQALRKTITGEDDLNATSVQLPFKIQSTL FKYLHLTPALTFTQYRVNSTVNKYYDHIAGKVVTQTINDSDSYATTVFSLDAQTRLYGVMNTGFLDKLVGLTAIRHVFIP TVSFIYNPDYTGSGYGIYGSYYDPVQMKNVQYNRFGESLYADVPEKRTFVGLSLQNIFQGKFRSKKVSNEDGSNAGAGYK TVQLLSLTASSGYNFAADSFPIAPLVLTASSNAFAPALMFSAGATYDFYTYDPATGDRVNKLAMDDGKGLLRFVNGFLNM SVSVSGSLHTSYASHDERDGEMSLVREKALPVEQAIYKERFNSDERTKFSASLPWSLRMSLYLISDKSNPLDPSSAALLN TAARLSLSRNWQVGLNTGYDLRNSEFVYPALMLDRDLHDFWFSAQWVPSGEHKGYLFQIAMKPANLKYLKLKAGSGHIVQ SPE >Mature_962_residues SCSGEVSIKEKGFIYSCSDLHDEHHQRPLTQHDPPVKFTKSIKLLTLLLLVQSFEGILPLRAGESASKPQKAKDGALPDS LLEKREDLDSTVVYTARDSLIYNVSKRTADLFGKAKVNYKDSRIEGPRITIEQATSTARATASRDSLGRPAELPVYTGKD GSFSAETIAYNYKTRIGTASDMSSKSDRDIYSGGSDQAIYSGKEVKRMPSGELYIEDGVYTTCDLEEPHYWFAGKHMKII PGERLISRPFVMYIHPEIFHMRLPVLPVMYLPYMSAPISNKRASGFLFPRFGNSGDMGSYFSNLGYFWAINDYADLRLDG DIAFKGGWRLGERFRYKNGDRYSGSISGEYARIILNSPGDSNYARYINRDLRIEHHQQFDPTAVLDVNLQFLGGDRYYYG YTSVDPENLVTDQATSYASFTKSWDENNRVLLGGYQRVDNLSTDELTQRVTLSLYQNRIYPFRPRLSSSSSESPGWSSRL FVQPTLSGSGQFDAAGGVNTDFYTGNAGLELGYLQDFSPGNRALFTQGLNMQALRKTITGEDDLNATSVQLPFKIQSTLF KYLHLTPALTFTQYRVNSTVNKYYDHIAGKVVTQTINDSDSYATTVFSLDAQTRLYGVMNTGFLDKLVGLTAIRHVFIPT VSFIYNPDYTGSGYGIYGSYYDPVQMKNVQYNRFGESLYADVPEKRTFVGLSLQNIFQGKFRSKKVSNEDGSNAGAGYKT VQLLSLTASSGYNFAADSFPIAPLVLTASSNAFAPALMFSAGATYDFYTYDPATGDRVNKLAMDDGKGLLRFVNGFLNMS VSVSGSLHTSYASHDERDGEMSLVREKALPVEQAIYKERFNSDERTKFSASLPWSLRMSLYLISDKSNPLDPSSAALLNT AARLSLSRNWQVGLNTGYDLRNSEFVYPALMLDRDLHDFWFSAQWVPSGEHKGYLFQIAMKPANLKYLKLKAGSGHIVQS PE
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 107608; Mature: 107477
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCSGEVSIKEKGFIYSCSDLHDEHHQRPLTQHDPPVKFTKSIKLLTLLLLVQSFEGILP CCCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE LRAGESASKPQKAKDGALPDSLLEKREDLDSTVVYTARDSLIYNVSKRTADLFGKAKVNY EECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECHHHHHHHHCCEEECC KDSRIEGPRITIEQATSTARATASRDSLGRPAELPVYTGKDGSFSAETIAYNYKTRIGTA CCCCCCCCEEEEECCCCHHHHHCCHHCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCC SDMSSKSDRDIYSGGSDQAIYSGKEVKRMPSGELYIEDGVYTTCDLEEPHYWFAGKHMKI CCCCCCCCCHHHCCCCCCEEECCHHHHCCCCCCEEEECCEEEEECCCCCCEEECCCEEEE IPGERLISRPFVMYIHPEIFHMRLPVLPVMYLPYMSAPISNKRASGFLFPRFGNSGDMGS CCCCHHHCCCEEEEECCHHEEECCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHH YFSNLGYFWAINDYADLRLDGDIAFKGGWRLGERFRYKNGDRYSGSISGEYARIILNSPG HHHCCCEEEEECCCEEEEECCCEEEECCCCCCCHHCCCCCCEECCCCCCCEEEEEEECCC DSNYARYINRDLRIEHHQQFDPTAVLDVNLQFLGGDRYYYGYTSVDPENLVTDQATSYAS CCHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCHHHHHHCCCHHHHH FTKSWDENNRVLLGGYQRVDNLSTDELTQRVTLSLYQNRIYPFRPRLSSSSSESPGWSSR HHHCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE LFVQPTLSGSGQFDAAGGVNTDFYTGNAGLELGYLQDFSPGNRALFTQGLNMQALRKTIT EEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCEEEECCCCHHHHHHHHC GEDDLNATSVQLPFKIQSTLFKYLHLTPALTFTQYRVNSTVNKYYDHIAGKVVTQTINDS CCCCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHEEEEECCCC DSYATTVFSLDAQTRLYGVMNTGFLDKLVGLTAIRHVFIPTVSFIYNPDYTGSGYGIYGS CCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEECCC YYDPVQMKNVQYNRFGESLYADVPEKRTFVGLSLQNIFQGKFRSKKVSNEDGSNAGAGYK CCCCEEECCCCHHHHCCHHHCCCCCCCEEEEEEHHHHHHCHHHCCCCCCCCCCCCCCCCE TVQLLSLTASSGYNFAADSFPIAPLVLTASSNAFAPALMFSAGATYDFYTYDPATGDRVN EEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHEEECCCCEEEEEECCCCCCCHH KLAMDDGKGLLRFVNGFLNMSVSVSGSLHTSYASHDERDGEMSLVREKALPVEQAIYKER EEECCCCCHHHHHHHHHHEEEEEECCCEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHH FNSDERTKFSASLPWSLRMSLYLISDKSNPLDPSSAALLNTAARLSLSRNWQVGLNTGYD CCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCEEEECCCCCC LRNSEFVYPALMLDRDLHDFWFSAQWVPSGEHKGYLFQIAMKPANLKYLKLKAGSGHIVQ CCCCCEEEEHHHHCCCHHHHHEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEC SPE CCC >Mature Secondary Structure SCSGEVSIKEKGFIYSCSDLHDEHHQRPLTQHDPPVKFTKSIKLLTLLLLVQSFEGILP CCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE LRAGESASKPQKAKDGALPDSLLEKREDLDSTVVYTARDSLIYNVSKRTADLFGKAKVNY EECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECHHHHHHHHCCEEECC KDSRIEGPRITIEQATSTARATASRDSLGRPAELPVYTGKDGSFSAETIAYNYKTRIGTA CCCCCCCCEEEEECCCCHHHHHCCHHCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCC SDMSSKSDRDIYSGGSDQAIYSGKEVKRMPSGELYIEDGVYTTCDLEEPHYWFAGKHMKI CCCCCCCCCHHHCCCCCCEEECCHHHHCCCCCCEEEECCEEEEECCCCCCEEECCCEEEE IPGERLISRPFVMYIHPEIFHMRLPVLPVMYLPYMSAPISNKRASGFLFPRFGNSGDMGS CCCCHHHCCCEEEEECCHHEEECCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHH YFSNLGYFWAINDYADLRLDGDIAFKGGWRLGERFRYKNGDRYSGSISGEYARIILNSPG HHHCCCEEEEECCCEEEEECCCEEEECCCCCCCHHCCCCCCEECCCCCCCEEEEEEECCC DSNYARYINRDLRIEHHQQFDPTAVLDVNLQFLGGDRYYYGYTSVDPENLVTDQATSYAS CCHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCHHHHHHCCCHHHHH FTKSWDENNRVLLGGYQRVDNLSTDELTQRVTLSLYQNRIYPFRPRLSSSSSESPGWSSR HHHCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE LFVQPTLSGSGQFDAAGGVNTDFYTGNAGLELGYLQDFSPGNRALFTQGLNMQALRKTIT EEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCEEEECCCCHHHHHHHHC GEDDLNATSVQLPFKIQSTLFKYLHLTPALTFTQYRVNSTVNKYYDHIAGKVVTQTINDS CCCCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHEEEEECCCC DSYATTVFSLDAQTRLYGVMNTGFLDKLVGLTAIRHVFIPTVSFIYNPDYTGSGYGIYGS CCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEECCC YYDPVQMKNVQYNRFGESLYADVPEKRTFVGLSLQNIFQGKFRSKKVSNEDGSNAGAGYK CCCCEEECCCCHHHHCCHHHCCCCCCCEEEEEEHHHHHHCHHHCCCCCCCCCCCCCCCCE TVQLLSLTASSGYNFAADSFPIAPLVLTASSNAFAPALMFSAGATYDFYTYDPATGDRVN EEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHEEECCCCEEEEEECCCCCCCHH KLAMDDGKGLLRFVNGFLNMSVSVSGSLHTSYASHDERDGEMSLVREKALPVEQAIYKER EEECCCCCHHHHHHHHHHEEEEEECCCEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHH FNSDERTKFSASLPWSLRMSLYLISDKSNPLDPSSAALLNTAARLSLSRNWQVGLNTGYD CCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCEEEECCCCCC LRNSEFVYPALMLDRDLHDFWFSAQWVPSGEHKGYLFQIAMKPANLKYLKLKAGSGHIVQ CCCCCEEEEHHHHCCCHHHHHEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEC SPE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA