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The map label for this gene is cbiDJ [H]

Identifier: 21673223

GI number: 21673223

Start: 396837

End: 398669

Strand: Reverse

Name: cbiDJ [H]

Synonym: CT0384

Alternate gene names: 21673223

Gene position: 398669-396837 (Counterclockwise)

Preceding gene: 21673224

Following gene: 21673221

Centisome position: 18.5

GC content: 63.78

Gene sequence:

>1833_bases
GTGATTCTGCTCTTCGGCGGTACCACCGAGGGACGGCAGGCGGCGGCGCTCTGCGACCGGCTCGGCCTGCCTTTCATCTA
CTCGACCAAAACCCGCGTCGAACCATTCGCAACTGCCTGCGGCGAGTTTCGCCACGGAGCGCTCGACGAGGCGGCGCTGT
CCGAACTCGTCTCGTCGAGCGGCGTCCGGCTCGTCATCGACGCCGCCCACCCCTTCGCCGCCCGACTGCACCGCTCGCTG
TTCGAGGTTTGCCAGCACCTCGCCGTTCGCCTGATCCGTTTCGACAGACCATCGGTGGATGTTCCAGATTTTGAAGGACT
TCACTCCGTAGCCGATTTCACCGAAGCTCTTGCGCTGCTCGACCGCCTCAATCCGGCGAAGCTGCTCGCGCTGACCGGAG
TACAGTCCATCGCTCCGTTACGCCCGTGGTGGGAACAGCACGACATGCTTCTGCGCATCCTGCCGACACAAGCCTCGATG
GAGCTTGCGCGGCGCGAGGGGATTCCCGAAGCGCAGCTGCTGCCTATGAATCCCGATAGTTCCGACGAGGCGCTCGAAAA
GCTGGTGCGGAAGCATGGCGTCGATTGCCTGCTCGCAAAGGAGAGCGGAGAGTCCGGCTTTTTCTCCTCGAAACTGCGGG
TTGCCGAACGGTGCGCCATTCCGCTGATCGTCATCCGGCGTCCCCCCGCACCCGCGTACGATGTGGTGGCAACATCCGTC
GAGGAGCTTGAAGCGCTGCTGCCAGACGCCGTCACGCTGAAGCCGCTCAGGACAGGCTACACCACCGGAGCCTGTGCCGC
CGCCGCTACCAAAGCCGCCGTGATCGCGCTGTTTGACGGTGCTGCGCCCGACTTGGTCACGATCACGCTTCCGTCCGGCA
AAGTCGCCAGCTTCGGGATCGTCTCGTACCGCGCGGAGCGAGGGCGATCGCGGTGCGGCGTGCGGAAGTTCGCGGGCGAC
GACCCCGATGTGACGCATGGCCTGCTGATTGTCAGTGAAGTGTCGCTGTTGCCGAACGGCGAACCGGGTGAAGTGCGATT
CCTGCAAGGTGAAGGAGTTGGCAGGGTGACGCTGCCGGGGCTGGAGATTCCACCCGGCGAACCGGCGATCAACCCCGTGC
CACGTCAAATGATCCGGGAGTGCATCGCCGGAGAGTTGCGGCAGCGCGGGTTGCGCCACGCCGTCGCGGTCACGATATCA
GTGCCCGGCGGCAACGCGGTCGCCCGCAAAACGATGAACGAACGGCTCGGCATCACCGGAGGTATCTCGATTCTCGGTAC
CAGTGGCGAGGTCATTCCTTACTCAATAGAGGCGTGGCTCGCCAGCATCCGCCAGTCTATCGCGGTTGCCTCCACCAACG
GCTGTACCACCCTCGCTCTCACCTCTGGTCTTCGAACCGAACGTCACCTCCGCGCGCGTTACCCCGACCTGCCGGAGCTG
GCCTGCATTCACTACGGCAACTATATTGGGCGCACGCTCGAACTGGTGCACCAGCACGGCGGCTTCAGCCGCGTCATCGT
TGGCGTCATGCTCGCCAAAGCCACCAAACTCGCTCAGGGCCAGGCCGACCTCTCCAGCCGCGTCGTTCAGCTCGATCCCC
GATGGCTTGCCAATCTCTCTGCCGATCTTGGCTACAGCCCGGTAATTGCAAACCAGCTCGCCGACCTCCACCTCGTCCGG
AATGTGACCGACCTCATCCCTTTTAGCAGCGATGAACCACTCTATACGGCCATTGCCAACGCCAGCTATCGCGCCTGTCG
CCGGTGGCTTCCTGACACCTCCCTGACCTTCGTGCTGTTCGACATGGAGGGGCAGGCGGTCGTCGTCGATTGA

Upstream 100 bases:

>100_bases
GTCGGTGAGGCGATCGGTGCGCGCGGCGGGCGCTCGAAGCTCTACGACCCATCCTTCACGCATGGCTTCCGCGAAGGGCA
TGGCGCGTGAGGAGGGCGGC

Downstream 100 bases:

>100_bases
ATTGCACGTTGCTGAAGTAGATATGAGGGGCTACAGTCTTTATCGTTGGCGCGCGTTGGCTGTCGATTTTGATATCGTAA
CGTTTGTTGAAAGGTGCCCA

Product: precorrin-6X reductase/cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MILLFGGTTEGRQAAALCDRLGLPFIYSTKTRVEPFATACGEFRHGALDEAALSELVSSSGVRLVIDAAHPFAARLHRSL
FEVCQHLAVRLIRFDRPSVDVPDFEGLHSVADFTEALALLDRLNPAKLLALTGVQSIAPLRPWWEQHDMLLRILPTQASM
ELARREGIPEAQLLPMNPDSSDEALEKLVRKHGVDCLLAKESGESGFFSSKLRVAERCAIPLIVIRRPPAPAYDVVATSV
EELEALLPDAVTLKPLRTGYTTGACAAAATKAAVIALFDGAAPDLVTITLPSGKVASFGIVSYRAERGRSRCGVRKFAGD
DPDVTHGLLIVSEVSLLPNGEPGEVRFLQGEGVGRVTLPGLEIPPGEPAINPVPRQMIRECIAGELRQRGLRHAVAVTIS
VPGGNAVARKTMNERLGITGGISILGTSGEVIPYSIEAWLASIRQSIAVASTNGCTTLALTSGLRTERHLRARYPDLPEL
ACIHYGNYIGRTLELVHQHGGFSRVIVGVMLAKATKLAQGQADLSSRVVQLDPRWLANLSADLGYSPVIANQLADLHLVR
NVTDLIPFSSDEPLYTAIANASYRACRRWLPDTSLTFVLFDMEGQAVVVD

Sequences:

>Translated_610_residues
MILLFGGTTEGRQAAALCDRLGLPFIYSTKTRVEPFATACGEFRHGALDEAALSELVSSSGVRLVIDAAHPFAARLHRSL
FEVCQHLAVRLIRFDRPSVDVPDFEGLHSVADFTEALALLDRLNPAKLLALTGVQSIAPLRPWWEQHDMLLRILPTQASM
ELARREGIPEAQLLPMNPDSSDEALEKLVRKHGVDCLLAKESGESGFFSSKLRVAERCAIPLIVIRRPPAPAYDVVATSV
EELEALLPDAVTLKPLRTGYTTGACAAAATKAAVIALFDGAAPDLVTITLPSGKVASFGIVSYRAERGRSRCGVRKFAGD
DPDVTHGLLIVSEVSLLPNGEPGEVRFLQGEGVGRVTLPGLEIPPGEPAINPVPRQMIRECIAGELRQRGLRHAVAVTIS
VPGGNAVARKTMNERLGITGGISILGTSGEVIPYSIEAWLASIRQSIAVASTNGCTTLALTSGLRTERHLRARYPDLPEL
ACIHYGNYIGRTLELVHQHGGFSRVIVGVMLAKATKLAQGQADLSSRVVQLDPRWLANLSADLGYSPVIANQLADLHLVR
NVTDLIPFSSDEPLYTAIANASYRACRRWLPDTSLTFVLFDMEGQAVVVD
>Mature_610_residues
MILLFGGTTEGRQAAALCDRLGLPFIYSTKTRVEPFATACGEFRHGALDEAALSELVSSSGVRLVIDAAHPFAARLHRSL
FEVCQHLAVRLIRFDRPSVDVPDFEGLHSVADFTEALALLDRLNPAKLLALTGVQSIAPLRPWWEQHDMLLRILPTQASM
ELARREGIPEAQLLPMNPDSSDEALEKLVRKHGVDCLLAKESGESGFFSSKLRVAERCAIPLIVIRRPPAPAYDVVATSV
EELEALLPDAVTLKPLRTGYTTGACAAAATKAAVIALFDGAAPDLVTITLPSGKVASFGIVSYRAERGRSRCGVRKFAGD
DPDVTHGLLIVSEVSLLPNGEPGEVRFLQGEGVGRVTLPGLEIPPGEPAINPVPRQMIRECIAGELRQRGLRHAVAVTIS
VPGGNAVARKTMNERLGITGGISILGTSGEVIPYSIEAWLASIRQSIAVASTNGCTTLALTSGLRTERHLRARYPDLPEL
ACIHYGNYIGRTLELVHQHGGFSRVIVGVMLAKATKLAQGQADLSSRVVQLDPRWLANLSADLGYSPVIANQLADLHLVR
NVTDLIPFSSDEPLYTAIANASYRACRRWLPDTSLTFVLFDMEGQAVVVD

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 65759; Mature: 65759

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS51014 COBK_CBIJ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLFGGTTEGRQAAALCDRLGLPFIYSTKTRVEPFATACGEFRHGALDEAALSELVSSS
CEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
GVRLVIDAAHPFAARLHRSLFEVCQHLAVRLIRFDRPSVDVPDFEGLHSVADFTEALALL
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
DRLNPAKLLALTGVQSIAPLRPWWEQHDMLLRILPTQASMELARREGIPEAQLLPMNPDS
HCCCHHHHHHHHCHHHHCCCCCCHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCCCC
SDEALEKLVRKHGVDCLLAKESGESGFFSSKLRVAERCAIPLIVIRRPPAPAYDVVATSV
HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
EELEALLPDAVTLKPLRTGYTTGACAAAATKAAVIALFDGAAPDLVTITLPSGKVASFGI
HHHHHHCCCCEEECHHHCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCEEEHH
VSYRAERGRSRCGVRKFAGDDPDVTHGLLIVSEVSLLPNGEPGEVRFLQGEGVGRVTLPG
HHHHHHHCHHHCCCHHCCCCCCCCHHHEEEEEEHHCCCCCCCCCEEEEECCCCCEEEECC
LEIPPGEPAINPVPRQMIRECIAGELRQRGLRHAVAVTISVPGGNAVARKTMNERLGITG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCC
GISILGTSGEVIPYSIEAWLASIRQSIAVASTNGCTTLALTSGLRTERHLRARYPDLPEL
CEEEEECCCCEEEEEHHHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHCCCCCCCH
ACIHYGNYIGRTLELVHQHGGFSRVIVGVMLAKATKLAQGQADLSSRVVQLDPRWLANLS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCHHHHHCC
ADLGYSPVIANQLADLHLVRNVTDLIPFSSDEPLYTAIANASYRACRRWLPDTSLTFVLF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHCCHHHHHHHHCCCCCEEEEEE
DMEGQAVVVD
ECCCCEEEEC
>Mature Secondary Structure
MILLFGGTTEGRQAAALCDRLGLPFIYSTKTRVEPFATACGEFRHGALDEAALSELVSSS
CEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
GVRLVIDAAHPFAARLHRSLFEVCQHLAVRLIRFDRPSVDVPDFEGLHSVADFTEALALL
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
DRLNPAKLLALTGVQSIAPLRPWWEQHDMLLRILPTQASMELARREGIPEAQLLPMNPDS
HCCCHHHHHHHHCHHHHCCCCCCHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCCCC
SDEALEKLVRKHGVDCLLAKESGESGFFSSKLRVAERCAIPLIVIRRPPAPAYDVVATSV
HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
EELEALLPDAVTLKPLRTGYTTGACAAAATKAAVIALFDGAAPDLVTITLPSGKVASFGI
HHHHHHCCCCEEECHHHCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCEEEHH
VSYRAERGRSRCGVRKFAGDDPDVTHGLLIVSEVSLLPNGEPGEVRFLQGEGVGRVTLPG
HHHHHHHCHHHCCCHHCCCCCCCCHHHEEEEEEHHCCCCCCCCCEEEEECCCCCEEEECC
LEIPPGEPAINPVPRQMIRECIAGELRQRGLRHAVAVTISVPGGNAVARKTMNERLGITG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCC
GISILGTSGEVIPYSIEAWLASIRQSIAVASTNGCTTLALTSGLRTERHLRARYPDLPEL
CEEEEECCCCEEEEEHHHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHCCCCCCCH
ACIHYGNYIGRTLELVHQHGGFSRVIVGVMLAKATKLAQGQADLSSRVVQLDPRWLANLS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCHHHHHCC
ADLGYSPVIANQLADLHLVRNVTDLIPFSSDEPLYTAIANASYRACRRWLPDTSLTFVLF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHCCHHHHHHHHCCCCCEEEEEE
DMEGQAVVVD
ECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA