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The map label for this gene is rfaQ [C]

Identifier: 21673061

GI number: 21673061

Start: 236278

End: 237642

Strand: Reverse

Name: rfaQ [C]

Synonym: CT0221

Alternate gene names: 21673061

Gene position: 237642-236278 (Counterclockwise)

Preceding gene: 21673063

Following gene: 21673060

Centisome position: 11.03

GC content: 60.88

Gene sequence:

>1365_bases
ATGGATCACATCCGGACTCATAACACTCACCACGCGCGGAAATCGGCTGACCATCTCTGCGTAATAACCGATGGCGGCGT
TAGCGCAATAGACCGCGTCTCCCAGAGGAATATCCGCGTTCGGCTTGGAGCCGAGCACCACGACCAGCTTTTTTGTCAAG
CTCATGGTTTGAAAAGATTACTGCCAGGAAAATCGATAGACCTGCATAAAGATAAAAAATGGCGTACATTGATTTGCTCG
ATAACGAAAAATCCCGAAACATCGATGACGCCGGATGCGGCCCGGAAAAACAGCCCGGAGATGAAGCCCCGAAAAAAGAA
GAAGCGGCAGTTCCGCCAGCTTTTCGCCCGCTCGCTGCAACGCCTCGCCCGCACGAGAAGCGGCAGCGCCGAATTCAGCG
GCCCGTTGCGCTCCGTCGCCATTCTCGCGCAGGAAAAACTCGGCGACTGCGTCTTGCTCACGCCGCTCGTCAGGAATCTG
CGGCAGGCCTTTCCCGATCTCGAAATTCACCTCATCACCTTCAGCCGCGCCTCAGCAAATTTCTTCATGAACGACCCGCA
GGTCACGGCAGTTCACCTCGTCAAGAAACAGCCCCGGCGCTATTTCCGGGAAGTGCTTTCGCGGAAGTTCGACCTGCTCT
TCAACACCAAGGATCACCCCTCGACCTGGTTTTTGCTCCAGTCGGCGCTCATTCGCGCCCGCTTCAAGGTGGGGCACAAC
AACCCGTTCCACGAAGGACTCTACGACCGCCTGCTCGACACGGAGTTTCACGCCCACATGGCGGTGAAAAATTGCGCCCT
GCTCCCGCTGCTTGGCGTCACGGCAGATACAGAGGCGTGCCGCCCATCGCTGCCCGCCATGCCGGTATCAAACGAGATAT
GGCAACTGCTATCACGGCTGGCAGAAGACATACGTCCGATCGGCGTCAACATCAGCGCGGGCGAGCCGAACCGGCTCTGG
ACGGAGGCGAAGTGGCGGGCGCTGCTCGAACGCTTCCCCGGTGAGCGCTTCGTGGTGCTCTCCGGGCCGGACGATCTGGA
TGCCAAGCGCCGCCTCGAAGAGCAGTGCCCGAACGCCGTCGCCTCGCCGCCAACGCGGAACCTCTACGAAGCGAGCTGCA
TCGTGGCGAAGCTGCGGCTGCTGGTGACGCCCGACACCTCGATGGTGCACGTCGCCTCGGCCACCGGCACACCCGTCGCC
GGGCTGTACCGCGAAGCGCCGCAGGACATTTCGCGCTTCGGCCCCTACGCCATTCCGTACGAAATCGTCATCTCGCCGAC
CGGCGAAGTGAGCGGCATCAAGCCGGAAAGCGTCGCTGACGCCGTGAGGCGGCTCATGGCCCGCGCCATTGGGAGAGAAG
CGTGA

Upstream 100 bases:

>100_bases
TTCTTGTCAGAATCATTTTTTCGGGCCGCGAGGCGAGGACCATCTGAAACTGCCGCTGATTCAACGCTCTATCCGGCACC
CCTTCCCTGAACTCTTTAGG

Downstream 100 bases:

>100_bases
AATCGTTTAAATTAACGGGCACAATTTCTCCGATCAAGCATCGCCCCTGCACATGACCCTCGTCCTCAACATCACCGCAA
TCGTGCTCTTTACCGGACTC

Product: heptosyltransferase

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Heptosyltransferase Family Protein; Lipopolysaccharide Heptosyltransferase; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MDHIRTHNTHHARKSADHLCVITDGGVSAIDRVSQRNIRVRLGAEHHDQLFCQAHGLKRLLPGKSIDLHKDKKWRTLICS
ITKNPETSMTPDAARKNSPEMKPRKKKKRQFRQLFARSLQRLARTRSGSAEFSGPLRSVAILAQEKLGDCVLLTPLVRNL
RQAFPDLEIHLITFSRASANFFMNDPQVTAVHLVKKQPRRYFREVLSRKFDLLFNTKDHPSTWFLLQSALIRARFKVGHN
NPFHEGLYDRLLDTEFHAHMAVKNCALLPLLGVTADTEACRPSLPAMPVSNEIWQLLSRLAEDIRPIGVNISAGEPNRLW
TEAKWRALLERFPGERFVVLSGPDDLDAKRRLEEQCPNAVASPPTRNLYEASCIVAKLRLLVTPDTSMVHVASATGTPVA
GLYREAPQDISRFGPYAIPYEIVISPTGEVSGIKPESVADAVRRLMARAIGREA

Sequences:

>Translated_454_residues
MDHIRTHNTHHARKSADHLCVITDGGVSAIDRVSQRNIRVRLGAEHHDQLFCQAHGLKRLLPGKSIDLHKDKKWRTLICS
ITKNPETSMTPDAARKNSPEMKPRKKKKRQFRQLFARSLQRLARTRSGSAEFSGPLRSVAILAQEKLGDCVLLTPLVRNL
RQAFPDLEIHLITFSRASANFFMNDPQVTAVHLVKKQPRRYFREVLSRKFDLLFNTKDHPSTWFLLQSALIRARFKVGHN
NPFHEGLYDRLLDTEFHAHMAVKNCALLPLLGVTADTEACRPSLPAMPVSNEIWQLLSRLAEDIRPIGVNISAGEPNRLW
TEAKWRALLERFPGERFVVLSGPDDLDAKRRLEEQCPNAVASPPTRNLYEASCIVAKLRLLVTPDTSMVHVASATGTPVA
GLYREAPQDISRFGPYAIPYEIVISPTGEVSGIKPESVADAVRRLMARAIGREA
>Mature_454_residues
MDHIRTHNTHHARKSADHLCVITDGGVSAIDRVSQRNIRVRLGAEHHDQLFCQAHGLKRLLPGKSIDLHKDKKWRTLICS
ITKNPETSMTPDAARKNSPEMKPRKKKKRQFRQLFARSLQRLARTRSGSAEFSGPLRSVAILAQEKLGDCVLLTPLVRNL
RQAFPDLEIHLITFSRASANFFMNDPQVTAVHLVKKQPRRYFREVLSRKFDLLFNTKDHPSTWFLLQSALIRARFKVGHN
NPFHEGLYDRLLDTEFHAHMAVKNCALLPLLGVTADTEACRPSLPAMPVSNEIWQLLSRLAEDIRPIGVNISAGEPNRLW
TEAKWRALLERFPGERFVVLSGPDDLDAKRRLEEQCPNAVASPPTRNLYEASCIVAKLRLLVTPDTSMVHVASATGTPVA
GLYREAPQDISRFGPYAIPYEIVISPTGEVSGIKPESVADAVRRLMARAIGREA

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 51127; Mature: 51127

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHIRTHNTHHARKSADHLCVITDGGVSAIDRVSQRNIRVRLGAEHHDQLFCQAHGLKRL
CCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCHHHH
LPGKSIDLHKDKKWRTLICSITKNPETSMTPDAARKNSPEMKPRKKKKRQFRQLFARSLQ
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RLARTRSGSAEFSGPLRSVAILAQEKLGDCVLLTPLVRNLRQAFPDLEIHLITFSRASAN
HHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEEEECCCCC
FFMNDPQVTAVHLVKKQPRRYFREVLSRKFDLLFNTKDHPSTWFLLQSALIRARFKVGHN
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCC
NPFHEGLYDRLLDTEFHAHMAVKNCALLPLLGVTADTEACRPSLPAMPVSNEIWQLLSRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHH
AEDIRPIGVNISAGEPNRLWTEAKWRALLERFPGERFVVLSGPDDLDAKRRLEEQCPNAV
HHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCC
ASPPTRNLYEASCIVAKLRLLVTPDTSMVHVASATGTPVAGLYREAPQDISRFGPYAIPY
CCCCCCCHHHHHHHHHHHHHEECCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCCCCCCE
EIVISPTGEVSGIKPESVADAVRRLMARAIGREA
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDHIRTHNTHHARKSADHLCVITDGGVSAIDRVSQRNIRVRLGAEHHDQLFCQAHGLKRL
CCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCHHHH
LPGKSIDLHKDKKWRTLICSITKNPETSMTPDAARKNSPEMKPRKKKKRQFRQLFARSLQ
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RLARTRSGSAEFSGPLRSVAILAQEKLGDCVLLTPLVRNLRQAFPDLEIHLITFSRASAN
HHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEEEECCCCC
FFMNDPQVTAVHLVKKQPRRYFREVLSRKFDLLFNTKDHPSTWFLLQSALIRARFKVGHN
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCC
NPFHEGLYDRLLDTEFHAHMAVKNCALLPLLGVTADTEACRPSLPAMPVSNEIWQLLSRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHH
AEDIRPIGVNISAGEPNRLWTEAKWRALLERFPGERFVVLSGPDDLDAKRRLEEQCPNAV
HHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCC
ASPPTRNLYEASCIVAKLRLLVTPDTSMVHVASATGTPVAGLYREAPQDISRFGPYAIPY
CCCCCCCHHHHHHHHHHHHHEECCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCCCCCCE
EIVISPTGEVSGIKPESVADAVRRLMARAIGREA
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA