BacMap

Definition	Chlorobium tepidum TLS, complete genome.
Accession	NC_002932
Length	2,154,946

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The map label for this gene is rbpE [H]

Identifier: 21672973

GI number: 21672973

Start: 127557

End: 127829

Strand: Reverse

Name: rbpE [H]

Synonym: CT0132

Alternate gene names: 21672973

Gene position: 127829-127557 (Counterclockwise)

Preceding gene: 21672984

Following gene: 21672968

Centisome position: 5.93

GC content: 51.28

Gene sequence:

>273_bases
ATGAACATTTACATTGGCAATCTGCCATACAGCGTTACCGATGAAGACCTGCGCGACAAATTCTCCGAGTTCGGGCAGGT
GCATAGCGCCAACATCATCACTGACAAATTTTCTGGTCGCTCCAAAGGCTTCGGGTTCGTTGACATGCCGAACGAAAGTG
AAGCTCGCGAAGCGATCGATGCCATGAACGACAAGGACTTTAAAGGCCGCACCATAAAAGTGAACGAGGCAAGGCCTCGC
GAGCAGCGTCCTCCCAGAAGAGAGCAATACTGA

Upstream 100 bases:

>100_bases
ATTTAGCCAGTGGTTGGCTGATCGCTTGCGAGAAAACAGGTGCTTTGGTTATCTCGTGGCGTTTCTTTTTTATCGAAGCA
CATGTTTCTACCGTCCCACA

Downstream 100 bases:

>100_bases
GCGCACCAACTGCTTCACGCAAAAGATTTTCCAGGCGGGCAGGCTTATAAAAAATGCCTGACCCGCTTTTTATATTTCAC
GTGTCGGCCTTGACACCGAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKDFKGRTIKVNEARPR
EQRPPRREQY

Sequences:

>Translated_90_residues
MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKDFKGRTIKVNEARPR
EQRPPRREQY
>Mature_90_residues
MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKDFKGRTIKVNEARPR
EQRPPRREQY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=36.8421052631579, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=39.5061728395062, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI291084655, Length=88, Percent_Identity=38.6363636363636, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=41.4634146341463, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=41.4634146341463, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=34.1463414634146, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI185135971, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316769, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316771, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316773, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316765, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316767, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4757926, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4504715, Length=82, Percent_Identity=39.0243902439024, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI208431836, Length=82, Percent_Identity=39.0243902439024, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI208431833, Length=82, Percent_Identity=39.0243902439024, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI118600973, Length=73, Percent_Identity=38.3561643835616, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI289547602, Length=84, Percent_Identity=38.0952380952381, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI188219593, Length=84, Percent_Identity=34.5238095238095, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI188219591, Length=84, Percent_Identity=34.5238095238095, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=40, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=37.6623376623377, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17532863, Length=78, Percent_Identity=37.1794871794872, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI32564504, Length=86, Percent_Identity=38.3720930232558, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI32564506, Length=87, Percent_Identity=37.9310344827586, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17531963, Length=87, Percent_Identity=37.9310344827586, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17531965, Length=87, Percent_Identity=37.9310344827586, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193209459, Length=85, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567133, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567131, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17539498, Length=88, Percent_Identity=39.7727272727273, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=32.8947368421053, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324312, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321013, Length=88, Percent_Identity=42.0454545454545, Blast_Score=64, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6319835, Length=76, Percent_Identity=43.421052631579, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=38.1578947368421, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24583879, Length=83, Percent_Identity=39.7590361445783, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583875, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281364913, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24583877, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24583873, Length=83, Percent_Identity=39.7590361445783, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10430; Mature: 10430

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAID
CEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEECCCCHHHHHHHH
AMNDKDFKGRTIKVNEARPREQRPPRREQY
HCCCCCCCCCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAID
CEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEECCCCHHHHHHHH
AMNDKDFKGRTIKVNEARPREQRPPRREQY
HCCCCCCCCCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]