| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21672913
Identifier: 21672913
GI number: 21672913
Start: 70817
End: 72238
Strand: Direct
Name: 21672913
Synonym: CT0072
Alternate gene names: NA
Gene position: 70817-72238 (Clockwise)
Preceding gene: 21672912
Following gene: 21672914
Centisome position: 3.29
GC content: 62.66
Gene sequence:
>1422_bases ATGGCGTGGAACAAGCAAGTCGCCCTGGTCTTTCTGCCCTCCGACAGCGGCGTCGATGGCGCACGCTCGCTCTACGGTGA CACCGAGCCGCCCGGCCTGAGGCGATGGCTCGACAGTGGCGTCCGGAACCTCATCAAACGAACACAGTTCGCTATTCCGC CGCTTGCCCTGATGATCCTTGCCTCGATCGAGGTGCCCGGCGTCGAACAGACGCTCTGCGACCTCCGGTTCGAGGAGTTT CCCTTCGACCGGCAATGGGATCTGGTCGGCATCAGCGTGCAGACCGGCATGGCCTCGAAAGCTTTCGAACTGGCCGACCG CTTGCGGAGCCGGGGTGTCAAAGTCGTGCTCGGCGGCCCGCACGTCACCATGTTCCCCGACTCATGCCGCGCGCACGCGG ATTGCCTCGTGCACGGCGAGGCGGACGACCTCTGGCGCGATGTGCTCGCAGATCTCGTCACCGATTCGCTCAAAGCCGAG TACCGCCCGGACGCCCCTCCGGACTTGCAGCTTCACCGCCCGGTGAGCCGCGCCTCGCTGAAAAAAAACCGCTACTTCAC CACCAACCTCGTCCAGACCGGACGAGGCTGCCCCTACCAGTGCGACTTCTGCAACGTCCACGTGCTGAACGGCAGGGTGC TCCGGCAGCGCAAAATCGACCACATTGTCGATGAGGTGCGACGCTTCAGCGAGGAGGACAAGCGCATCTTCTTTTTTGTG GACGACTCCATCAACGGCGACCCGCTCTTCGCGCGGGAGCTGTTCAAACACCTGATTCCGCTCAACATCACCTGGTTTGG TCAGGCGACCACCGCGCTCGGCCAGCAGCCGGAGCTGCTCGACACCTTTGCCCGCTCCGGCTGCCGCGCGCTGCTCGTGG GCATCGAGAGCATCGAGCCGTCGAGCCGCATCGCCCACAAGAAGACGCAGAACCGTACCGACGAACTGGCGGGCAACATC CGGGCGATCCGAAAGAGCGGCATAAGTCTTTACGGAAGCTTCATCTACGGTCTCGACGGTGACACACTCCAGACGCCGCA AGCCATCCTCGACTTCATCGCCGACACCCGCCTCGACGTGCCTGGTATCAACACACTCCGCCCTATTCCCGGCACGAAGG TGTTCGACCGCCTGCGCGAGGAGGGACGGCTGCTCTTCGACCCGGAGGACATCACCTCGTTCCGCTACACCTTCGGCCAG GAGATGCTTTACCGCCCGAAAAACATTCCGCTGCCGGAGTTCATCGAAAGCTACTCCGAGTTGACGCGCAAGGTCTTCAA TATCGGCAACGCCATCCGGCGCGGGCTGGAAGCGCCGGGCATCAACGCCGCCGTGCTTTTTTTCAACCTGTTTTACACCC ATCTCTACCGCCTGTCGAGAAACGATCTCCGCAAGCAGCTCGAAACCCTCGGAAGCGCCTGA
Upstream 100 bases:
>100_bases TCGAAAATGCCCGCCAGGAGGAGGCGCGCCAGATGCGCAAATATTTCAAGCCGCTGCCGACCAAGCCTTCGGAGCAGAAC CAACCCGACTGGTAAGCCAG
Downstream 100 bases:
>100_bases AAGTGTTTTGAGCGGAGACGAATTATGATTAAAATGAAGTTCGTCTTATTTTAGCGAGGATACTCCCAACGACAACACCG ATAAATCAAGGAGAAAGCCA
Product: BchE/P-methylase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MAWNKQVALVFLPSDSGVDGARSLYGDTEPPGLRRWLDSGVRNLIKRTQFAIPPLALMILASIEVPGVEQTLCDLRFEEF PFDRQWDLVGISVQTGMASKAFELADRLRSRGVKVVLGGPHVTMFPDSCRAHADCLVHGEADDLWRDVLADLVTDSLKAE YRPDAPPDLQLHRPVSRASLKKNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFV DDSINGDPLFARELFKHLIPLNITWFGQATTALGQQPELLDTFARSGCRALLVGIESIEPSSRIAHKKTQNRTDELAGNI RAIRKSGISLYGSFIYGLDGDTLQTPQAILDFIADTRLDVPGINTLRPIPGTKVFDRLREEGRLLFDPEDITSFRYTFGQ EMLYRPKNIPLPEFIESYSELTRKVFNIGNAIRRGLEAPGINAAVLFFNLFYTHLYRLSRNDLRKQLETLGSA
Sequences:
>Translated_473_residues MAWNKQVALVFLPSDSGVDGARSLYGDTEPPGLRRWLDSGVRNLIKRTQFAIPPLALMILASIEVPGVEQTLCDLRFEEF PFDRQWDLVGISVQTGMASKAFELADRLRSRGVKVVLGGPHVTMFPDSCRAHADCLVHGEADDLWRDVLADLVTDSLKAE YRPDAPPDLQLHRPVSRASLKKNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFV DDSINGDPLFARELFKHLIPLNITWFGQATTALGQQPELLDTFARSGCRALLVGIESIEPSSRIAHKKTQNRTDELAGNI RAIRKSGISLYGSFIYGLDGDTLQTPQAILDFIADTRLDVPGINTLRPIPGTKVFDRLREEGRLLFDPEDITSFRYTFGQ EMLYRPKNIPLPEFIESYSELTRKVFNIGNAIRRGLEAPGINAAVLFFNLFYTHLYRLSRNDLRKQLETLGSA >Mature_472_residues AWNKQVALVFLPSDSGVDGARSLYGDTEPPGLRRWLDSGVRNLIKRTQFAIPPLALMILASIEVPGVEQTLCDLRFEEFP FDRQWDLVGISVQTGMASKAFELADRLRSRGVKVVLGGPHVTMFPDSCRAHADCLVHGEADDLWRDVLADLVTDSLKAEY RPDAPPDLQLHRPVSRASLKKNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFVD DSINGDPLFARELFKHLIPLNITWFGQATTALGQQPELLDTFARSGCRALLVGIESIEPSSRIAHKKTQNRTDELAGNIR AIRKSGISLYGSFIYGLDGDTLQTPQAILDFIADTRLDVPGINTLRPIPGTKVFDRLREEGRLLFDPEDITSFRYTFGQE MLYRPKNIPLPEFIESYSELTRKVFNIGNAIRRGLEAPGINAAVLFFNLFYTHLYRLSRNDLRKQLETLGSA
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 53528; Mature: 53397
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWNKQVALVFLPSDSGVDGARSLYGDTEPPGLRRWLDSGVRNLIKRTQFAIPPLALMIL CCCCCEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ASIEVPGVEQTLCDLRFEEFPFDRQWDLVGISVQTGMASKAFELADRLRSRGVKVVLGGP HHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCC HVTMFPDSCRAHADCLVHGEADDLWRDVLADLVTDSLKAEYRPDAPPDLQLHRPVSRASL EEEECCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHH KKNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFV HCCCCEEHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE DDSINGDPLFARELFKHLIPLNITWFGQATTALGQQPELLDTFARSGCRALLVGIESIEP ECCCCCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHCCCCEEEHHHHCCCC SSRIAHKKTQNRTDELAGNIRAIRKSGISLYGSFIYGLDGDTLQTPQAILDFIADTRLDV HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEHEEECCCCCCCCCHHHHHHHHHHCCCCC PGINTLRPIPGTKVFDRLREEGRLLFDPEDITSFRYTFGQEMLYRPKNIPLPEFIESYSE CCCCCCCCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LTRKVFNIGNAIRRGLEAPGINAAVLFFNLFYTHLYRLSRNDLRKQLETLGSA HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AWNKQVALVFLPSDSGVDGARSLYGDTEPPGLRRWLDSGVRNLIKRTQFAIPPLALMIL CCCCEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ASIEVPGVEQTLCDLRFEEFPFDRQWDLVGISVQTGMASKAFELADRLRSRGVKVVLGGP HHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCC HVTMFPDSCRAHADCLVHGEADDLWRDVLADLVTDSLKAEYRPDAPPDLQLHRPVSRASL EEEECCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHH KKNRYFTTNLVQTGRGCPYQCDFCNVHVLNGRVLRQRKIDHIVDEVRRFSEEDKRIFFFV HCCCCEEHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE DDSINGDPLFARELFKHLIPLNITWFGQATTALGQQPELLDTFARSGCRALLVGIESIEP ECCCCCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHCCCCEEEHHHHCCCC SSRIAHKKTQNRTDELAGNIRAIRKSGISLYGSFIYGLDGDTLQTPQAILDFIADTRLDV HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEHEEECCCCCCCCCHHHHHHHHHHCCCCC PGINTLRPIPGTKVFDRLREEGRLLFDPEDITSFRYTFGQEMLYRPKNIPLPEFIESYSE CCCCCCCCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LTRKVFNIGNAIRRGLEAPGINAAVLFFNLFYTHLYRLSRNDLRKQLETLGSA HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]