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The map label for this gene is rimM

Identifier: 21672656

GI number: 21672656

Start: 433895

End: 434422

Strand: Direct

Name: rimM

Synonym: BUsg382

Alternate gene names: 21672656

Gene position: 433895-434422 (Clockwise)

Preceding gene: 21672655

Following gene: 21672657

Centisome position: 67.64

GC content: 20.08

Gene sequence:

>528_bases
ATAAATATTTTTTTAAAAAAACCATTACATCCTATTTTAATAGGAAAAATAGGAAAAGCTTATGGAATATTAGGTTGGGT
AAAATTTTTTTCTTTTACTGAAAATAAAGAAAAAATATTCAGCTATTTTCCATGGTTTATTCTAAAAAAAAAATGGGAAA
TCATTCATGTTGATAAATGGAAAAAACACAACAATAATTTTATTATTCATATAGAAAATATTCTTGATCGTTCAACAGTC
AGTAAATTTACTAATTTAGAAATTTTTATAGACAAAAGTATACTTCCGATATTAAAAGAAGATGAATATTACTGGAATGA
TGTAATTGACTGTAAAGTATTTAATTCGAGGAAAGAGTATTTAGGAAAGGTAATTAATCTAATTAGAAATCAAAATAATG
ACGTTCTTATCATAAGAAATAACTTAAAAAAAAATAATTTTAAAAAAATAATGATTCCTTTTATTCATAAAAAAATAGTT
AAATATATTAATGTTAAACATAAAATTATAACAGTTATATGGAATTGA

Upstream 100 bases:

>100_bases
TGAATTTAAATCGTATTGAATACTGGCAAGGAAAGGGAGCTCAAATTTCAAAAAGATCTCAAAAACTAATAAAATTATTT
AATAAAAAAGAGGATACAGT

Downstream 100 bases:

>100_bases
ACAAACATGATCAAACTAAAACAAAATATGATAACACTTTAATATGGTTCTGTATTATTACAATTTTTCCGGAAATGTTC
TATGCAATTACAAATTATGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNIFLKKPLHPILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKWKKHNNNFIIHIENILDRSTV
SKFTNLEIFIDKSILPILKEDEYYWNDVIDCKVFNSRKEYLGKVINLIRNQNNDVLIIRNNLKKNNFKKIMIPFIHKKIV
KYINVKHKIITVIWN

Sequences:

>Translated_175_residues
MNIFLKKPLHPILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKWKKHNNNFIIHIENILDRSTV
SKFTNLEIFIDKSILPILKEDEYYWNDVIDCKVFNSRKEYLGKVINLIRNQNNDVLIIRNNLKKNNFKKIMIPFIHKKIV
KYINVKHKIITVIWN
>Mature_175_residues
MNIFLKKPLHPILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKWKKHNNNFIIHIENILDRSTV
SKFTNLEIFIDKSILPILKEDEYYWNDVIDCKVFNSRKEYLGKVINLIRNQNNDVLIIRNNLKKNNFKKIMIPFIHKKIV
KYINVKHKIITVIWN

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=38.6363636363636, Blast_Score=160, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BUCAP (Q8K9F5)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660723.1
- ProteinModelPortal:   Q8K9F5
- SMR:   Q8K9F5
- EnsemblBacteria:   EBBUCT00000000224
- GeneID:   1005775
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg382
- GeneTree:   EBGT00050000008004
- HOGENOM:   HBG703775
- OMA:   WIDLIGL
- ProtClustDB:   PRK00122
- BioCyc:   BAPH198804:BUSG382-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21191; Mature: 21191

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFLKKPLHPILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKW
CCEEECCCCCCEEHEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHEEECCCEEEEEECC
KKHNNNFIIHIENILDRSTVSKFTNLEIFIDKSILPILKEDEYYWNDVIDCKVFNSRKEY
CCCCCCEEEEEHHHHCHHHHHHHCCEEEEECCCCCCEECCCCCCCCCEEEEEEECCHHHH
LGKVINLIRNQNNDVLIIRNNLKKNNFKKIMIPFIHKKIVKYINVKHKIITVIWN
HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCEEEEEEEEC
>Mature Secondary Structure
MNIFLKKPLHPILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKW
CCEEECCCCCCEEHEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHEEECCCEEEEEECC
KKHNNNFIIHIENILDRSTVSKFTNLEIFIDKSILPILKEDEYYWNDVIDCKVFNSRKEY
CCCCCCEEEEEHHHHCHHHHHHHCCEEEEECCCCCCEECCCCCCCCCEEEEEEECCHHHH
LGKVINLIRNQNNDVLIIRNNLKKNNFKKIMIPFIHKKIVKYINVKHKIITVIWN
HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438