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The map label for this gene is ompF [C]

Identifier: 21672622

GI number: 21672622

Start: 391985

End: 393094

Strand: Reverse

Name: ompF [C]

Synonym: BUsg347

Alternate gene names: 21672622

Gene position: 393094-391985 (Counterclockwise)

Preceding gene: 21672623

Following gene: 21672611

Centisome position: 61.28

GC content: 26.94

Gene sequence:

>1110_bases
ATGAAAAATCATAAATCTTTAGCAATATTAATACCCATGTTATTTGCTGGTAGTACTGCAGTAAACGCTATAGAAATTTT
TAATAAAAATGGTAATAAATTAGAATTATACGGTAGTATTAATCCTAATCATAATTTTTCTAATGAATTTTTATCTACTA
AAATTTCTTCTAAAGAAGATAATACAAACGCTATTTTAGGGCTATCAGGGAAAATAAAAATTACTGATAAACTGTCAAGT
TATGCTCAAATTGAATATAAAAACAATTTTTTTATGCCAGAAGATTTAATGAATAAACAACAACCTAACACTGTGCGTTT
AGGATATGCTGGTTTAAAATATGGTAATTTAGGATCGATAGATTATGGTCGTAATTATGGTGTTATTCATGACGCACAAT
CGTTAACAGATCATGTTCCATACATTAATAAAAAAAGCATTTTTGCATATAACGATAATTATATGGTAGGTAGAAATCAC
AGTTTACTTACTTATAGAAATAATAATGTTTTTGGCTTAGTAGACGGTATCAGTTTTGCATTACAATATCAAGATGAAAT
TAAAAATAGAGATTTAAATAAGGGAAAAAGTTCTTCTGGTTGGGGGGCATCATTAAAGTATGAGAGTGATTCTGGACTGA
CTGCTGTTGGTTCTTGTTTTACCTCTGAAAGAATGATATCTTCAAATAAAAAAGATTTAAAAAATACATCTGTAGATTCA
TATGGATTGGGTTTTAAATATGATGCTAATAATGTATATGTTGCTGCTTTTTATGGCTCTGCGCGTAATTTAATGCCTTA
TAATATGCACATAAGTGATTCTTTTATTAACGAAACACAAAATATTGAAGCAATTGCAGAATATAGTTTTGACTCTGGAT
TTCATCCTTCTTTAAGTTATTTAGATTCTAAAGGACAAAATTCAAATTCACCGAAAAAAGAATTAGATTTAGCAAAACAA
ATCAATATTTCTACTCGTTATGAATTTAATAAAAATGTTTCAACGTATATGAATTATAAAATCAATTTATTAAAAGAAAA
TGATTTTATTTCTCAAAATCAAATTCCTACAGATAATACTATTGGTGCTGGAGTAGTCTATCAATTCTAA

Upstream 100 bases:

>100_bases
TAATTTTTTATTAATTAAAATTTTATGAAAATATGATAATTATTTAATTTCAATTTATTTTAATTTCACTTATTTTTACT
AAAAAGGTAGTACAAAAATT

Downstream 100 bases:

>100_bases
TGTTATTTAACATAATTTTTGATATTTTATAAATTTTTTAGAATTAATTATTGAAAATAAAAGCTTTCTACTGATTTATA
AAAAATAAAAAATTTATTTT

Product: outer membrane protein F precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKNHKSLAILIPMLFAGSTAVNAIEIFNKNGNKLELYGSINPNHNFSNEFLSTKISSKEDNTNAILGLSGKIKITDKLSS
YAQIEYKNNFFMPEDLMNKQQPNTVRLGYAGLKYGNLGSIDYGRNYGVIHDAQSLTDHVPYINKKSIFAYNDNYMVGRNH
SLLTYRNNNVFGLVDGISFALQYQDEIKNRDLNKGKSSSGWGASLKYESDSGLTAVGSCFTSERMISSNKKDLKNTSVDS
YGLGFKYDANNVYVAAFYGSARNLMPYNMHISDSFINETQNIEAIAEYSFDSGFHPSLSYLDSKGQNSNSPKKELDLAKQ
INISTRYEFNKNVSTYMNYKINLLKENDFISQNQIPTDNTIGAGVVYQF

Sequences:

>Translated_369_residues
MKNHKSLAILIPMLFAGSTAVNAIEIFNKNGNKLELYGSINPNHNFSNEFLSTKISSKEDNTNAILGLSGKIKITDKLSS
YAQIEYKNNFFMPEDLMNKQQPNTVRLGYAGLKYGNLGSIDYGRNYGVIHDAQSLTDHVPYINKKSIFAYNDNYMVGRNH
SLLTYRNNNVFGLVDGISFALQYQDEIKNRDLNKGKSSSGWGASLKYESDSGLTAVGSCFTSERMISSNKKDLKNTSVDS
YGLGFKYDANNVYVAAFYGSARNLMPYNMHISDSFINETQNIEAIAEYSFDSGFHPSLSYLDSKGQNSNSPKKELDLAKQ
INISTRYEFNKNVSTYMNYKINLLKENDFISQNQIPTDNTIGAGVVYQF
>Mature_369_residues
MKNHKSLAILIPMLFAGSTAVNAIEIFNKNGNKLELYGSINPNHNFSNEFLSTKISSKEDNTNAILGLSGKIKITDKLSS
YAQIEYKNNFFMPEDLMNKQQPNTVRLGYAGLKYGNLGSIDYGRNYGVIHDAQSLTDHVPYINKKSIFAYNDNYMVGRNH
SLLTYRNNNVFGLVDGISFALQYQDEIKNRDLNKGKSSSGWGASLKYESDSGLTAVGSCFTSERMISSNKKDLKNTSVDS
YGLGFKYDANNVYVAAFYGSARNLMPYNMHISDSFINETQNIEAIAEYSFDSGFHPSLSYLDSKGQNSNSPKKELDLAKQ
INISTRYEFNKNVSTYMNYKINLLKENDFISQNQIPTDNTIGAGVVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1787160, Length=375, Percent_Identity=38.1333333333333, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1788544, Length=387, Percent_Identity=37.4677002583979, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787641, Length=369, Percent_Identity=39.2953929539295, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1786436, Length=374, Percent_Identity=37.4331550802139, Blast_Score=232, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PORL_BUCAP (Q8K9I8)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660689.1
- ProteinModelPortal:   Q8K9I8
- EnsemblBacteria:   EBBUCT00000000449
- GeneID:   1005823
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg347
- GeneTree:   EBGT00050000008188
- HOGENOM:   HBG673855
- OMA:   RTDNQVA
- ProtClustDB:   CLSK315952
- BioCyc:   BAPH198804:BUSG347-MONOMER
- InterPro:   IPR001897
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183
- PRINTS:   PR00182

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 41394; Mature: 41394

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNHKSLAILIPMLFAGSTAVNAIEIFNKNGNKLELYGSINPNHNFSNEFLSTKISSKED
CCCCCEEEEEEEHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCC
NTNAILGLSGKIKITDKLSSYAQIEYKNNFFMPEDLMNKQQPNTVRLGYAGLKYGNLGSI
CCCEEEEECCEEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECEECCCCCCCC
DYGRNYGVIHDAQSLTDHVPYINKKSIFAYNDNYMVGRNHSLLTYRNNNVFGLVDGISFA
CCCCCCCEEECHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEEECCCEEEEECCEEEE
LQYQDEIKNRDLNKGKSSSGWGASLKYESDSGLTAVGSCFTSERMISSNKKDLKNTSVDS
EEEHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCHHHCCCCCCC
YGLGFKYDANNVYVAAFYGSARNLMPYNMHISDSFINETQNIEAIAEYSFDSGFHPSLSY
CCCCEEECCCCEEEEEEECCCCCCCEEEEEECHHHHCCCCCEEEEEEECCCCCCCCCHHH
LDSKGQNSNSPKKELDLAKQINISTRYEFNKNVSTYMNYKINLLKENDFISQNQIPTDNT
HHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
IGAGVVYQF
CCCCEEEEC
>Mature Secondary Structure
MKNHKSLAILIPMLFAGSTAVNAIEIFNKNGNKLELYGSINPNHNFSNEFLSTKISSKED
CCCCCEEEEEEEHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCC
NTNAILGLSGKIKITDKLSSYAQIEYKNNFFMPEDLMNKQQPNTVRLGYAGLKYGNLGSI
CCCEEEEECCEEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECEECCCCCCCC
DYGRNYGVIHDAQSLTDHVPYINKKSIFAYNDNYMVGRNHSLLTYRNNNVFGLVDGISFA
CCCCCCCEEECHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEEECCCEEEEECCEEEE
LQYQDEIKNRDLNKGKSSSGWGASLKYESDSGLTAVGSCFTSERMISSNKKDLKNTSVDS
EEEHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCHHHCCCCCCC
YGLGFKYDANNVYVAAFYGSARNLMPYNMHISDSFINETQNIEAIAEYSFDSGFHPSLSY
CCCCEEECCCCEEEEEEECCCCCCCEEEEEECHHHHCCCCCEEEEEEECCCCCCCCCHHH
LDSKGQNSNSPKKELDLAKQINISTRYEFNKNVSTYMNYKINLLKENDFISQNQIPTDNT
HHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
IGAGVVYQF
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12089438