Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 213693047

GI number: 213693047

Start: 2431691

End: 2433229

Strand: Direct

Name: radA [H]

Synonym: Blon_2194

Alternate gene names: 213693047

Gene position: 2431691-2433229 (Clockwise)

Preceding gene: 213693045

Following gene: 213693053

Centisome position: 85.84

GC content: 60.62

Gene sequence:

>1539_bases
ATGGCGAAATCAAGTGTGCAGTATGTATGTTCCGAATGCGGTTGGAACGGGCCGAAGTGGTACGGCCGTTGCCCCGAGTG
TGGTCAGTGGGGCACGGTCGAGGAATTTCACGAGGCTCGGCCGGCGGCAGGCTCTCGTACGGCCGCTCCCGGCCGAACAT
CACGCACGCAGTCGGTTACGGTTGCCAACAACGCCAGATCTGCAGCCCGTCCGATTACCGAAGTGGGCACGGAAAGCGTC
GAGCGGCTCGGTACCGGGTTTTTCGAATTCGACCGTGTGCTCGGCGGTGGCGTGGTGCCGGGTTCAGTGACGCTGATAGC
GGGCGAACCGGGTATCGGCAAGTCGACATTGCTGTTGCAGACGGCCGGCAATATCGCGCGCGTTGTGGCGGTGGACAGTA
CGTTCCGAGGGGCAGGTCAGCGGTCTGCCCAACAGTCGAGCCGGGCGCAGGGCGGCACATCAAACACGGTGTCGACACAG
GACAACACAGCATCAACGCACGCCAACACCGTGCTGTACATTTCCGGCGAGGAATCACAGGCGCAGGTTCGTTTGCGCGC
TTCCCGCATCAACGCGGTGGAGCCGAACTTGTTACTGGCCTCCACCACCGACCTGTCCACAGTATTGGGGCTGATCGAAC
AGAACAAGCCGGCCTTGGCCATTGTGGATTCGGCGCAAACCATCGTCTCGCAGGAGGTCGATGGCATTTCCGGCGGTTCG
ACTCAGGTGCGCGAAGTGGCAAGCGCGCTGATAGATACCGCTAAGACACTTGACATTCCAGTATTTCTGGTTGGTCATGT
GACCAAGGACGGTTCGATTGCAGGCCCGCGCACATTGGAGCATCTGGTCGATGTGGTCTGTCAATTCGAAGGCGACAGCG
AGACTGCGCTGAGAATGCTGCGAGCGGTGAAGAATCGTTTTGGTCCGACCGATGAAGTCGGCTGTTTCGACATGAGCGGT
GAGGGCATCGAAGAGGTCACCGATCCCGCCGGATTATTCCTGTCTGGAGACGGCCCTGATGCGGCCAACGTGGCACCCGT
GGAAGGCACCTGTGTGACGTTCACATTGGATGGGCATCGCAGTCTGCCTATCGAAGTACAGGCTCTGGTCACCACGTCGG
TGCTGCCCACACCTCGACGTGCGGTCAATGGCGTGGACCCCAGCCGTATCGCCATGCTGGTCGCGGTGCTCTACCGCCAC
AGCAAGCTCAACCTGCTGTCCAACGACCTGTATATCTCCACTATTGCCGGAGGCCAGGCCAAGGAGCCCGGTTCCGACTT
GGCGATAGTGGCGGCACTGGCGAGCGCCGCCACGTCAAAACCCATTGCTCGAGCCACGTGTGCCATCGGGGAAATTTCCC
TGACCGGTCAGGTGCGCCCGGTACCGCGTATGGAATATCGCCTTCGCGAGGCCGCGCGCCTTGGCTTTACGACGGCGGTC
ATTCCTCCTCTGCGCAAGCCAGTGCATGTCGAGGGACTTCGGCTGGTGGAGTCCAACACATTGTCCGACGCATTAGACGC
CTTGGGAGTGCGTAAATAA

Upstream 100 bases:

>100_bases
GCTAGGCGGCCGTAATCTTAGTCGTTGTGCGCAAGCCGCGTGAAACTCTTACGAACGGTAAAAATTTACCGTCCGCTGGT
GTTCGGGTTAGGGTGAGACC

Downstream 100 bases:

>100_bases
CCCTGAGATATGCCTCAGGCGGTAAGACGCTTGGTCTCTTCGACGTTGCGCTTGAGTTCGTCAACGAGTTGGTCGGGGCC
ATCAAACTTGACCTGCGGGC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVTVANNARSAARPITEVGTESV
ERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQ
DNTASTHANTVLYISGEESQAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGS
TQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAVKNRFGPTDEVGCFDMSG
EGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGHRSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRH
SKLNLLSNDLYISTIAGGQAKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAV
IPPLRKPVHVEGLRLVESNTLSDALDALGVRK

Sequences:

>Translated_512_residues
MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVTVANNARSAARPITEVGTESV
ERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQ
DNTASTHANTVLYISGEESQAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGS
TQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAVKNRFGPTDEVGCFDMSG
EGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGHRSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRH
SKLNLLSNDLYISTIAGGQAKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAV
IPPLRKPVHVEGLRLVESNTLSDALDALGVRK
>Mature_511_residues
AKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVTVANNARSAARPITEVGTESVE
RLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQD
NTASTHANTVLYISGEESQAQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGST
QVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAVKNRFGPTDEVGCFDMSGE
GIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGHRSLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHS
KLNLLSNDLYISTIAGGQAKEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAVI
PPLRKPVHVEGLRLVESNTLSDALDALGVRK

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=513, Percent_Identity=35.672514619883, Blast_Score=325, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 53706; Mature: 53575

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVT
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEE
VANNARSAARPITEVGTESVERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQ
EECCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEE
TAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQDNTASTHANTVLYISGEESQ
ECCCEEEEEEECCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
AQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGS
CCEEEEHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCC
TQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRML
HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGHR
HHHHHHCCCCCCCCEEECCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCC
SLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQA
CCCEEEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCC
KEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAV
CCCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHCC
IPPLRKPVHVEGLRLVESNTLSDALDALGVRK
CCCCCCCCEECCEEEEECCCHHHHHHHHCCCC
>Mature Secondary Structure 
AKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVT
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEE
VANNARSAARPITEVGTESVERLGTGFFEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQ
EECCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEE
TAGNIARVVAVDSTFRGAGQRSAQQSSRAQGGTSNTVSTQDNTASTHANTVLYISGEESQ
ECCCEEEEEEECCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
AQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGS
CCEEEEHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCC
TQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRML
HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANVAPVEGTCVTFTLDGHR
HHHHHHCCCCCCCCEEECCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCC
SLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQA
CCCEEEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCC
KEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAV
CCCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHCC
IPPLRKPVHVEGLRLVESNTLSDALDALGVRK
CCCCCCCCEECCEEEEECCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]