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The map label for this gene is smpB

Identifier: 213692882

GI number: 213692882

Start: 2210976

End: 2211452

Strand: Reverse

Name: smpB

Synonym: Blon_2023

Alternate gene names: 213692882

Gene position: 2211452-2210976 (Counterclockwise)

Preceding gene: 213692883

Following gene: 213692881

Centisome position: 78.07

GC content: 61.64

Gene sequence:

>477_bases
ATGCCCAAGGAGACTGGTGAGAAACTCATCGTCCAGAACAAGAAGGCCCGGCATGACTATGCCATCGAAGACAAGTATGA
GGCAGGGCTGGCCCTGACCGGCACCGAGGTCAAATCGTTGCGCGAGGGGCGCGCATCGCTGTCCGAGGCGTTCATCTCCA
TCGACCGCCGCGGCGAGATGTGGCTGGAGGGTGCGAACATCCCCGAATACCTGAACGGCACATGGAACAACCATGCGCCC
AAGCGCAAGCGCAAGCTGCTGCTGCACCGACTGCAGATCACCAAGCTCGCCCGCGGCATCGAGGCCAAGGGATACACGAT
TGTGCCGCTGAGCCTGTACTTCAAGGACGGTCGCGTCAAGGCGGAGATCGCACTGGCCCGAGGCAAGAAGGAATTCGACA
AACGCCAGGCCCTGCGCGAAGAGCAGGACAAGCGTGAAGCCCTACGCGCCATGCGCTACGCCAACATGCGCCACTAG

Upstream 100 bases:

>100_bases
GAAGAGGAACCCTTTTTCGTATTCGATGCCGGTCCGTGATATCGTCGGATGTTGCGTTGCTACTGCTACCCACGAGTTGT
TGCCCACGAAAGGAGGAGAC

Downstream 100 bases:

>100_bases
TCCCGCCACTTGGCTCCTCTCCGGAGGGGGGCCAAGAGTAGGATGTCCGCGTTGTGGGTCGTTTCGCCCACGATTAACGC
TTCCGTAGCATTGCACTCCT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWLEGANIPEYLNGTWNNHAP
KRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH

Sequences:

>Translated_158_residues
MPKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWLEGANIPEYLNGTWNNHAP
KRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH
>Mature_157_residues
PKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWLEGANIPEYLNGTWNNHAPK
RKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=151, Percent_Identity=43.7086092715232, Blast_Score=117, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_BIFLD (B3DTB5)

Other databases:

- EMBL:   CP000605
- RefSeq:   YP_001954882.1
- ProteinModelPortal:   B3DTB5
- SMR:   B3DTB5
- GeneID:   6363072
- GenomeReviews:   CP000605_GR
- KEGG:   blj:BLD_0938
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18277; Mature: 18146

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEM
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCE
WLEGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVK
EEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEE
AEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH
EEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEM
CCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCE
WLEGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVK
EEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEE
AEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH
EEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA