Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is zur [H]

Identifier: 213692838

GI number: 213692838

Start: 2156497

End: 2156925

Strand: Reverse

Name: zur [H]

Synonym: Blon_1979

Alternate gene names: 213692838

Gene position: 2156925-2156497 (Counterclockwise)

Preceding gene: 213692839

Following gene: 213692836

Centisome position: 76.14

GC content: 61.31

Gene sequence:

>429_bases
ATGGTTGAACATATCGAACGCCAGACCAAGCAGAAGGACGCGATTCGCGCCGCCTTGGCCGACTGTGAGGAGTTCATCTC
CGCTCAGGACCTGCACCGCAGGCTGGAGGACGAAGGCTCGAAAATCGGCTTGGCCACCGTGTACCGCCAGCTCAACGCCT
TGGCTGATGCCGGTGCCGCCGACACGATCCGCCTGGACGGCCAGCAGCTGTTCCGCCTATGCGGCGACGACGGACATCAC
CACCACTTGGTGTGCAAGCGGTGCGGCAAAACCGTGGAAATCGACCCGCCCAGCGAGGCTTGGCTGCGCAAAGTGGCCGA
CGGCCACGGCTTCACCGTCGAATCCCACACCCTGGAGGTCTTCGGACTATGCCCTGATTGCCAAAAGGAGCAGAAAGCGC
AGAAGTCTCAGAAAGCAGTGAGCGAATAA

Upstream 100 bases:

>100_bases
GCCACATCACCGTGCTCACCGACAACCCTGATGCCACGGTTGCTGACCTTGAGGCCACCGGCTGCTGGGACGACCTGAAA
AAGAAGGCGTGACCTTATCG

Downstream 100 bases:

>100_bases
CAAATGGGATCGGCTTCAAAGCCGATCCCATTTGTTATTCCGCTGCTATTCCACCGACTTCAGGGCGCCGAGCATGTCGA
CCGTCTTCAACCGCCGGTAG

Product: ferric uptake regulator, Fur family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAADTIRLDGQQLFRLCGDDGHH
HHLVCKRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEVFGLCPDCQKEQKAQKSQKAVSE

Sequences:

>Translated_142_residues
MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAADTIRLDGQQLFRLCGDDGHH
HHLVCKRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEVFGLCPDCQKEQKAQKSQKAVSE
>Mature_142_residues
MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAADTIRLDGQQLFRLCGDDGHH
HHLVCKRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEVFGLCPDCQKEQKAQKSQKAVSE

Specific function: Required for the zinc-specific repression of two operons implicated in zinc uptake, yciC and ycdHIyceA. Also represses the expression of rpmE2, the gene for ribosomal protein L31B, which is expressed only after the end of exponential growth [H]

COG id: COG0735

COG function: function code P; Fe2+/Zn2+ uptake regulation proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Fur family [H]

Homologues:

Organism=Escherichia coli, GI1786899, Length=116, Percent_Identity=40.5172413793103, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002481 [H]

Pfam domain/function: PF01475 FUR [H]

EC number: NA

Molecular weight: Translated: 15817; Mature: 15817

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
DTIRLDGQQLFRLCGDDGHHHHLVCKRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEV
CEEEECHHHHHHHHCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCEECCCCEEE
FGLCPDCQKEQKAQKSQKAVSE
EECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
DTIRLDGQQLFRLCGDDGHHHHLVCKRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEV
CEEEECHHHHHHHHCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCEECCCCEEE
FGLCPDCQKEQKAQKSQKAVSE
EECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 9811636 [H]