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The map label for this gene is ykoE [H]

Identifier: 213692754

GI number: 213692754

Start: 2059421

End: 2060089

Strand: Reverse

Name: ykoE [H]

Synonym: Blon_1888

Alternate gene names: 213692754

Gene position: 2060089-2059421 (Counterclockwise)

Preceding gene: 213692755

Following gene: 213692753

Centisome position: 72.72

GC content: 63.98

Gene sequence:

>669_bases
ATGTGCATCATGTGCGTACATATATCCATGTATGTCCGGCCTGCGTACGAGCAGAAGAAAGGCGCATTCATGACTGAAGC
TGTGGCCAAAGCCAATTACAAGTGGCGCGTCGTCGATATCGTCGTCGCCGCAATCATCGCCGTCGCATCCGGCGTCATTT
TCTGGGGCTGGGACATTGTCTGCTCCGCCCCGCTGGCCCTGTTCGAAGGCGTGACCCCCGGTTTCGAGGGTCTGCTCAAC
GGATTCTGGCTGTTCGCCGGCCCGCTCGCCGCAATCATCGTGCGCAAGCCCGGTGCCGCACTGTTCGCCGAAACCCTCGC
CGCCTTCCTTGAACTTACGCTGGGCAACCAGTGGGGCGTCGGCGGCTCGCTGATCGTCGGCATCATCCAGGGTCTGGGTG
CCGAAATTGCCTTCGCCGTCTTCGCCTGGAAGAAGTGGAACATCGGCACCACCATCCTGTCCGGTGCGCTCGCCGGCGTG
GGCTGCTGGGCCTACTACTGGGCCACCAACCCGGGCTGGAACGGCCTGCGCGTCACCTGGTACTTGGTCGGCTCCATCAT
CTCCGGCGTCGTGATCGCCGGCGTGGTGGTCTGGTATCTGTCCCGCGCGCTCGCCGCCACCGGTGCTCTGGAGCGCTTCG
AGTCCGGACGCGGCAAGGCGCGGGTCTGA

Upstream 100 bases:

>100_bases
ACATAGTCTCGACCGATGGAACGTGACCGGATAATGCCGGCGCACGGAAATGTCGCTCTTACCCACCCGTGCCTGAACCA
ACCTGCGCGTGGCCACGAAC

Downstream 100 bases:

>100_bases
TGCAGGTCGATCCGGCCGCGGTCAGGGCCAGCGGCTGGGGCTGGCGGCACGCGACGCGCAAGGATTTCGCGTTGCGTGCC
GTCGATTTCACCATCCGGCC

Product: narrowly conserved hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MCIMCVHISMYVRPAYEQKKGAFMTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIVCSAPLALFEGVTPGFEGLLN
GFWLFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGVGGSLIVGIIQGLGAEIAFAVFAWKKWNIGTTILSGALAGV
GCWAYYWATNPGWNGLRVTWYLVGSIISGVVIAGVVVWYLSRALAATGALERFESGRGKARV

Sequences:

>Translated_222_residues
MCIMCVHISMYVRPAYEQKKGAFMTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIVCSAPLALFEGVTPGFEGLLN
GFWLFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGVGGSLIVGIIQGLGAEIAFAVFAWKKWNIGTTILSGALAGV
GCWAYYWATNPGWNGLRVTWYLVGSIISGVVIAGVVVWYLSRALAATGALERFESGRGKARV
>Mature_222_residues
MCIMCVHISMYVRPAYEQKKGAFMTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIVCSAPLALFEGVTPGFEGLLN
GFWLFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGVGGSLIVGIIQGLGAEIAFAVFAWKKWNIGTTILSGALAGV
GCWAYYWATNPGWNGLRVTWYLVGSIISGVVIAGVVVWYLSRALAATGALERFESGRGKARV

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 23723; Mature: 23723

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCIMCVHISMYVRPAYEQKKGAFMTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIV
CEEEEEEEEHHHCCCHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHHH
CSAPLALFEGVTPGFEGLLNGFWLFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGV
HHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHCCCCCCC
GGSLIVGIIQGLGAEIAFAVFAWKKWNIGTTILSGALAGVGCWAYYWATNPGWNGLRVTW
CHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHH
YLVGSIISGVVIAGVVVWYLSRALAATGALERFESGRGKARV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MCIMCVHISMYVRPAYEQKKGAFMTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIV
CEEEEEEEEHHHCCCHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHHH
CSAPLALFEGVTPGFEGLLNGFWLFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGV
HHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHCCCCCCC
GGSLIVGIIQGLGAEIAFAVFAWKKWNIGTTILSGALAGVGCWAYYWATNPGWNGLRVTW
CHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHH
YLVGSIISGVVIAGVVVWYLSRALAATGALERFESGRGKARV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]