| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692678
Identifier: 213692678
GI number: 213692678
Start: 1974261
End: 1975664
Strand: Direct
Name: 213692678
Synonym: Blon_1811
Alternate gene names: NA
Gene position: 1974261-1975664 (Clockwise)
Preceding gene: 213692677
Following gene: 213692679
Centisome position: 69.69
GC content: 63.53
Gene sequence:
>1404_bases GTGCTCTCCCAACCATCGGGCATCGTCTCCAGCGATTTCCCGAAGCTGCGGCGTGCGGCCACGCGCATGGGCATCTCCTA CGACCTGTGGCAGCAGGGACTGCTGTATCTGATGCTCGGCAAACGGGAGGACGGTTTGTATGCGTGCGGCGAGGGCGGCA CTGTCATATCGATATGCCGTCAGGTGGGCAAGACGTTCACCATCGGCTCCGCCGTGTTCCTCCTGTGCGCCATGCAACCC AACCTCAAGGTGCTGTGGACCGCGCACCGCACCAGAACCTCGGACGAGACGTTCCAATCGATGTGCGGCTTCGCGAAGAA CAAGCTCATGGCCGGGCATGTGGAGCATATCCGGCGTGCGAACGGCCAGCAGGAGATAGCGTTCCGCAATGGTTCGCGCG TCATGTTCGGCGCTCGCGAGCAGGGCTTCGGCCGCGGCTTCGACGCGGTGGACGTGGAGATCTTCGACGAGGCGCAGATC CTCACCGTCAAGGCTTTGAACGACATGATCCCGGCCACGAACGTGAGCCCGAATCCGCTGATCGTGTTCATGGGCACACC ACCGCAGCCCGGCGACCCGTCGGAAACATTCGCCGACAAAAGGCGTGACGGGCTCAAACACACGGACGGCATGCTCTACG TGGAATTCAGCGCCGACCCCGACTGCGACCCCGACGACCGCGAACAGTGGGCGAAGGCCAACCCGAGTTTCCCGAAGCGC ACGTCCGAGACCGCCATCCTGCGCATGCGCAAGCTGCTCGGCGACGATGACAACTTCCGCCGCGAGGGCTTGGGCATCTG GGACGGGGAGAACAGCATTTCGGCCATAGACCCGCAGCAGTGGGAGGCCGGCAATATCGATCAGCCGGACTTGGATGGCC GGCTCGCGTTCGGTTTGGATATGCCGCCCGACCGCAGCGCCCTGGCCATCGGCATGGCCGTACGCCACGATGACGGTACG GCGCTCATCAATCTGCAGGAATACCGTGACGCGAAACAGTCGGGCACCGCGTGGGCGGTGGACTGGCTTGCGGAACGCTG GCCGAAGACCAGCGCGGTGGTCATCGACGCGCAGTCGCCGGCCATGAGCCTTTTGCCCGACCTGCAGAAACGACACATCA AAGTGATCGTCACCCAGTCACGTGATCTGGGGGCGGCGACCGGAAGGGTGCTCGACATGATCCACGCCGGAACCCTGCAG CATTTGGACGCGGAGCACCAGCCGCAACTGTCCATGGCCGCGCATGGCGTCACGTTGCGTGACATCGGCCCCAACGGGCT GAAGGCGTGGAACAAGAAAGGCTCCGACATCGACATTTCGCCGTTGCAGGCATGCACGGTCGCATTGCACGGGGCATTCG TCAGCAAACGCAAACCGGGCAGGAAGCAGAGGGTGATGGTCTGA
Upstream 100 bases:
>100_bases CTCGAGGCACTGTCCGGCGGCACCGATCTGTTCGGCGACGAGTCCGTGGAATCAAGCGAGGTGGATGATGTCGGAGCGTC GATTGTCTGAGCTCGCCCGA
Downstream 100 bases:
>100_bases TGGTCAGCAGTGAAATCGTGACCGCCGCAGGCGGCAAACCGTTCCTCGCCAGCGAATCCCTTCCCTCCATTCGAGCTATA AAAGGCATCGATGAGGCTGA
Product: phage Terminase
Products: NA
Alternate protein names: Phage-Related Terminase; Phage Terminase Large Subunit; Terminase; Phage Terminase Protein; Phage Associated Protein; Phage Protein
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MLSQPSGIVSSDFPKLRRAATRMGISYDLWQQGLLYLMLGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQP NLKVLWTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRANGQQEIAFRNGSRVMFGAREQGFGRGFDAVDVEIFDEAQI LTVKALNDMIPATNVSPNPLIVFMGTPPQPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKR TSETAILRMRKLLGDDDNFRREGLGIWDGENSISAIDPQQWEAGNIDQPDLDGRLAFGLDMPPDRSALAIGMAVRHDDGT ALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVVIDAQSPAMSLLPDLQKRHIKVIVTQSRDLGAATGRVLDMIHAGTLQ HLDAEHQPQLSMAAHGVTLRDIGPNGLKAWNKKGSDIDISPLQACTVALHGAFVSKRKPGRKQRVMV
Sequences:
>Translated_467_residues MLSQPSGIVSSDFPKLRRAATRMGISYDLWQQGLLYLMLGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQP NLKVLWTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRANGQQEIAFRNGSRVMFGAREQGFGRGFDAVDVEIFDEAQI LTVKALNDMIPATNVSPNPLIVFMGTPPQPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKR TSETAILRMRKLLGDDDNFRREGLGIWDGENSISAIDPQQWEAGNIDQPDLDGRLAFGLDMPPDRSALAIGMAVRHDDGT ALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVVIDAQSPAMSLLPDLQKRHIKVIVTQSRDLGAATGRVLDMIHAGTLQ HLDAEHQPQLSMAAHGVTLRDIGPNGLKAWNKKGSDIDISPLQACTVALHGAFVSKRKPGRKQRVMV >Mature_467_residues MLSQPSGIVSSDFPKLRRAATRMGISYDLWQQGLLYLMLGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQP NLKVLWTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRANGQQEIAFRNGSRVMFGAREQGFGRGFDAVDVEIFDEAQI LTVKALNDMIPATNVSPNPLIVFMGTPPQPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKR TSETAILRMRKLLGDDDNFRREGLGIWDGENSISAIDPQQWEAGNIDQPDLDGRLAFGLDMPPDRSALAIGMAVRHDDGT ALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVVIDAQSPAMSLLPDLQKRHIKVIVTQSRDLGAATGRVLDMIHAGTLQ HLDAEHQPQLSMAAHGVTLRDIGPNGLKAWNKKGSDIDISPLQACTVALHGAFVSKRKPGRKQRVMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51475; Mature: 51475
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSQPSGIVSSDFPKLRRAATRMGISYDLWQQGLLYLMLGKREDGLYACGEGGTVISICR CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCEEEECCCCHHHHHHH QVGKTFTIGSAVFLLCAMQPNLKVLWTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRA HHCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHC NGQQEIAFRNGSRVMFGAREQGFGRGFDAVDVEIFDEAQILTVKALNDMIPATNVSPNPL CCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEHHHHCCCCCCCCCCCE IVFMGTPPQPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKR EEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCC TSETAILRMRKLLGDDDNFRREGLGIWDGENSISAIDPQQWEAGNIDQPDLDGRLAFGLD CCHHHHHHHHHHHCCCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC MPPDRSALAIGMAVRHDDGTALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVVIDAQSP CCCCCCEEEEEEEEEECCCCEEEEHHHHHHHHHCCCEEHHHHHHHHCCCCCEEEEECCCC AMSLLPDLQKRHIKVIVTQSRDLGAATGRVLDMIHAGTLQHLDAEHQPQLSMAAHGVTLR HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEE DIGPNGLKAWNKKGSDIDISPLQACTVALHGAFVSKRKPGRKQRVMV ECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLSQPSGIVSSDFPKLRRAATRMGISYDLWQQGLLYLMLGKREDGLYACGEGGTVISICR CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCEEEECCCCHHHHHHH QVGKTFTIGSAVFLLCAMQPNLKVLWTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRA HHCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHC NGQQEIAFRNGSRVMFGAREQGFGRGFDAVDVEIFDEAQILTVKALNDMIPATNVSPNPL CCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEHHHHCCCCCCCCCCCE IVFMGTPPQPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKR EEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCC TSETAILRMRKLLGDDDNFRREGLGIWDGENSISAIDPQQWEAGNIDQPDLDGRLAFGLD CCHHHHHHHHHHHCCCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC MPPDRSALAIGMAVRHDDGTALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVVIDAQSP CCCCCCEEEEEEEEEECCCCEEEEHHHHHHHHHCCCEEHHHHHHHHCCCCCEEEEECCCC AMSLLPDLQKRHIKVIVTQSRDLGAATGRVLDMIHAGTLQHLDAEHQPQLSMAAHGVTLR HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEE DIGPNGLKAWNKKGSDIDISPLQACTVALHGAFVSKRKPGRKQRVMV ECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA