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The map label for this gene is xerC [H]

Identifier: 213692647

GI number: 213692647

Start: 1956374

End: 1957564

Strand: Reverse

Name: xerC [H]

Synonym: Blon_1780

Alternate gene names: 213692647

Gene position: 1957564-1956374 (Counterclockwise)

Preceding gene: 213692648

Following gene: 213692646

Centisome position: 69.1

GC content: 61.04

Gene sequence:

>1191_bases
ATGGCGAACGTCACCAGATACAAGACCAGTAAGGGTGAAACCAGATACCGTGTGAGGTATCGCAAGCCGGACGGCACGCA
GACTGACAAGCGTGGATTCAAGAGAAAAATCGATGCGGAGAATTGGGCGGCGAAAAGGGTCACCACAGCCAAGGCCGAGG
GAACGTACATCGACCCGCAGGCCGGCAAGGCGACGGTGGGGGAGCTGGGGCCCGCCTGGCTGGCCAAGAAGAAGCTCAGC
ACCAAGCCCAGCCATTACCGTACCCTCGAAGGCGCATGGGAGAAGTGGGTGAAACCGGAATGGGGCAACACCCCGGTATC
CGCAGTCACCCGCGAGACGACGCAACAATGGGTCACCGGAATCAGCCAGGGCAAGACCGTCAAGGACGAGCGGGGCAACG
AGATAGTGCTCGCCAAACCCCGAAGCGCTAGCGTCGTCCTCCGCGCCCACGGCGTGCTCGCCGGAATATTGGACGACGCG
AAGAAAGACCGGCGTATTCCGGACAATCCAGCGAGGGGCATCGAACTGCCACGCAAGCGCAGGAAGAAGCACGTGTATCT
CACCGCCGAACAGCTTGACCGGCTGGCAGGCAGCGTCACCCCATGGAGACGAGACCTCGTCCTCGTGCTTGGACTATGCG
GCATGCGATGGGGTGAACTCATACCCCTGAGGGTGATGGACGTCGATCTTGAAAAGCATCGTATATATATAGGAGTGAGC
GCGCCGATGGTGGGCGGCGTCATCATCCCCGATGACACCAAGACCTACAAGGCCCGCGCCATCATGTACCCGGTCGTGCT
GGACCCGATCATGCGCAGACTGTGCGCAGACCGGAAACCCGGCGACCTGTTATTTGAACAGCCGGGACGCGAGGGCATGA
TGATACGCGAGTGGGGTAATGCGAGCCGCGATGACGGTTGGCTGTCGGTCGGCCTGCGGCGTGCCGGCATACCCGGCCAC
CTCACAATCCATGACCTGAGGCATACGGCCGCGAGTCTCATGGTCAGAGCGGGCGCGAACGTGAAGGCCGTGCAACGGCA
GTTGGGGCACAAGAGCGCGGCCATGACGTTGGACGTGTACGCCGACCTTTTCGATGATGATCTGGACGAGCTGTCGGAGC
GCATGGGTGAGATGCTGGCGCGCGAGAATGTGGGCAAAATGTGGGCAAATGAGGTTTCGAGAGCCGCATAA

Upstream 100 bases:

>100_bases
TTGATCTTGACCATCAACAGGGCGGGTGAAACATCGACCAGCTTGCTTATCAGAAAGGAGGACGCTTCGTCTTTTATCCT
ACACGGGGCGAAGCATACCC

Downstream 100 bases:

>100_bases
TCGAGACGGGAGTAGGTCTAAGCGGCTTTTCTCCGTAGGGTTCGAGTCCCACCGGAGGCACCTTGAAATCGGCCTGTGGC
CGATGCGTTTTTTGTGGCTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MANVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAGKATVGELGPAWLAKKKLS
TKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDA
KKDRRIPDNPARGIELPRKRRKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS
APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGNASRDDGWLSVGLRRAGIPGH
LTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMTLDVYADLFDDDLDELSERMGEMLARENVGKMWANEVSRAA

Sequences:

>Translated_396_residues
MANVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAGKATVGELGPAWLAKKKLS
TKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDA
KKDRRIPDNPARGIELPRKRRKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS
APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGNASRDDGWLSVGLRRAGIPGH
LTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMTLDVYADLFDDDLDELSERMGEMLARENVGKMWANEVSRAA
>Mature_395_residues
ANVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAGKATVGELGPAWLAKKKLST
KPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAK
KDRRIPDNPARGIELPRKRRKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVSA
PMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGNASRDDGWLSVGLRRAGIPGHL
TIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMTLDVYADLFDDDLDELSERMGEMLARENVGKMWANEVSRAA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44433; Mature: 44302

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQ
CCCCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHEEEECCCCCEECCC
AGKATVGELGPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTG
CCCCCHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKR
HHCCCEECCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
RKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS
CCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEC
APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN
CCCCCCEEECCCCCCHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC
ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMTLDVY
CCCCCCCEEECHHHCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHEEHHHH
ADLFDDDLDELSERMGEMLARENVGKMWANEVSRAA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQ
CCCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHEEEECCCCCEECCC
AGKATVGELGPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTG
CCCCCHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKR
HHCCCEECCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
RKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS
CCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEC
APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN
CCCCCCEEECCCCCCHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC
ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMTLDVY
CCCCCCCEEECHHHCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHEEHHHH
ADLFDDDLDELSERMGEMLARENVGKMWANEVSRAA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA