| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is expZ [H]
Identifier: 213692531
GI number: 213692531
Start: 1813717
End: 1815228
Strand: Direct
Name: expZ [H]
Synonym: Blon_1663
Alternate gene names: 213692531
Gene position: 1813717-1815228 (Clockwise)
Preceding gene: 213692530
Following gene: 213692532
Centisome position: 64.03
GC content: 58.99
Gene sequence:
>1512_bases ATGAGTCAGATATTGACACTAACCGATATTTCCTACTGCTATCCGGGCGCGCCGGAACCATTGTTCGAACATCTGTCCGC GACATTCGCGGCCGGCTGGGCCGCAGTGCTGGGAGACAATGGCATTGGCAAGACCACACTGGCCAAACTCGCCTGCGGCA TGCTTTCCCCCGATTCGGGGATAGTCTCGCCGAACCCGTGCAAGATGGCAGTCGCCTACTGTCCGCAACGTACTGATGAA ACGCCTACGAATCTGGATGATTTCGTGGCGGATTGGACGGGCGAGACCATCGCCATCCGCGACGCGCTGAACATCGGCGA CGATTGGGCATACCGATACGAGACTCTCTCTGGAGGCGAAGCCAAGCGGCTGCAAATCGCTTGTGCGCTGGCCGGCGATC CCGACGTGCTGGTGTTGGACGAGCCAACCAATCATGTGGACGGCAGGACGCGCCAAGCCATCACGCAGGCGATGCGTCGG TTCGATGGCATAGGCATCGTGATCTCCCATGATGTCGAACTGATCGACGCGACGTGTTCGCGCTGCGTGATGCTGGAGCG CCGACATGCGCGTGGGCGTAACATCACGGCGGCGAACACCTATCAGGGTGGATATACCCAGGCCGCGCAGCAGATGCGCG ACAATCAACGTGCCGATACGGCCGCCATACAGTCCACTCGAAAGGAGCTGCAACGCATGCAGCGCATCAAGCGGGAGCGG GCGCAGCGTGCGCGCGAACTGGATATGCGGAAGAATCAGGGAATGCGCATCGATATCAAGGACATCGACGCTCGCAAAGC CCTGAAAAATCTGAAACCGGCTATCGGCACCACTGTCGCACAGACAAGCGCGCAATTCGACGGGCGTATCGCCGCCGCCA CCGACAGACTTGCTCACCTCAGCGAAGCGGCCAAACGCTACGACGGCACCATCTGGATGAACGTCATGCCGAGCTCACGC AGGGAATTGACGCGCATCCCCAACGACCACGCCATCGCGGACCAACCCGATATGCTGAGCATCGGCCCGCGCGACCGCAT CGGCATCAGCGGTCCAAATGGCAGCGGTAAAACCGCATTGATACGACGATTGATCGAAGCGCTGGAGCGTGATGAAGCGC AGCGGCATTCGGAGAGAATGCCATATCTCTATATTCCCCAAAATTCCAGCGACATGGATACCGCCAACGCAATGAACCGC TTGCATGCTTTGACGGACGAGCAACGCGCCATTGTGCTCAGCGCCTACGCCCAACTTAACGCCGACCCCGACAGACTGCT CGCCGGCGGCAATCCCTCGCCAGGCGAACTACGCAAACTTCTGTTGTGCCTCGGCATGATTGAACAGCCACAGCTCATCA TCATGGATGAGCCGACCAACCACCTCGACCTGCACTCCAAACAGGCACTTGCTAATACGCTATCCTCCTATGCGGGCGCA TTGGTCGCAGTCAGCCATGACGAATGGTTTCTGAATGCCGTCACATCGATTCGATGGCGATGCGCGTCATGA
Upstream 100 bases:
>100_bases CGAGGACTGCTTTCTGAATACAGCTTGGCAATAAATGGCACAGTCCGCCACTTTTCGATAGTCACAGTTTGATTAATGCG CCTTATCGAAAGAGGCTTCC
Downstream 100 bases:
>100_bases CGCTATCTATGAGTTTACGTTCCTTCGTAAGACTTGGATATCGGCAAGACGCATTCCTTTTCGTATGAAGCTGTATCGAT GGCAATGACCGAGCAAGAGG
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MSQILTLTDISYCYPGAPEPLFEHLSATFAAGWAAVLGDNGIGKTTLAKLACGMLSPDSGIVSPNPCKMAVAYCPQRTDE TPTNLDDFVADWTGETIAIRDALNIGDDWAYRYETLSGGEAKRLQIACALAGDPDVLVLDEPTNHVDGRTRQAITQAMRR FDGIGIVISHDVELIDATCSRCVMLERRHARGRNITAANTYQGGYTQAAQQMRDNQRADTAAIQSTRKELQRMQRIKRER AQRARELDMRKNQGMRIDIKDIDARKALKNLKPAIGTTVAQTSAQFDGRIAAATDRLAHLSEAAKRYDGTIWMNVMPSSR RELTRIPNDHAIADQPDMLSIGPRDRIGISGPNGSGKTALIRRLIEALERDEAQRHSERMPYLYIPQNSSDMDTANAMNR LHALTDEQRAIVLSAYAQLNADPDRLLAGGNPSPGELRKLLLCLGMIEQPQLIIMDEPTNHLDLHSKQALANTLSSYAGA LVAVSHDEWFLNAVTSIRWRCAS
Sequences:
>Translated_503_residues MSQILTLTDISYCYPGAPEPLFEHLSATFAAGWAAVLGDNGIGKTTLAKLACGMLSPDSGIVSPNPCKMAVAYCPQRTDE TPTNLDDFVADWTGETIAIRDALNIGDDWAYRYETLSGGEAKRLQIACALAGDPDVLVLDEPTNHVDGRTRQAITQAMRR FDGIGIVISHDVELIDATCSRCVMLERRHARGRNITAANTYQGGYTQAAQQMRDNQRADTAAIQSTRKELQRMQRIKRER AQRARELDMRKNQGMRIDIKDIDARKALKNLKPAIGTTVAQTSAQFDGRIAAATDRLAHLSEAAKRYDGTIWMNVMPSSR RELTRIPNDHAIADQPDMLSIGPRDRIGISGPNGSGKTALIRRLIEALERDEAQRHSERMPYLYIPQNSSDMDTANAMNR LHALTDEQRAIVLSAYAQLNADPDRLLAGGNPSPGELRKLLLCLGMIEQPQLIIMDEPTNHLDLHSKQALANTLSSYAGA LVAVSHDEWFLNAVTSIRWRCAS >Mature_502_residues SQILTLTDISYCYPGAPEPLFEHLSATFAAGWAAVLGDNGIGKTTLAKLACGMLSPDSGIVSPNPCKMAVAYCPQRTDET PTNLDDFVADWTGETIAIRDALNIGDDWAYRYETLSGGEAKRLQIACALAGDPDVLVLDEPTNHVDGRTRQAITQAMRRF DGIGIVISHDVELIDATCSRCVMLERRHARGRNITAANTYQGGYTQAAQQMRDNQRADTAAIQSTRKELQRMQRIKRERA QRARELDMRKNQGMRIDIKDIDARKALKNLKPAIGTTVAQTSAQFDGRIAAATDRLAHLSEAAKRYDGTIWMNVMPSSRR ELTRIPNDHAIADQPDMLSIGPRDRIGISGPNGSGKTALIRRLIEALERDEAQRHSERMPYLYIPQNSSDMDTANAMNRL HALTDEQRAIVLSAYAQLNADPDRLLAGGNPSPGELRKLLLCLGMIEQPQLIIMDEPTNHLDLHSKQALANTLSSYAGAL VAVSHDEWFLNAVTSIRWRCAS
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI108773784, Length=254, Percent_Identity=24.0157480314961, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI108773782, Length=254, Percent_Identity=24.0157480314961, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI69354671, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=8e-11, Organism=Homo sapiens, GI10947135, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=25.6505576208178, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI2367384, Length=541, Percent_Identity=23.4750462107209, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1789751, Length=531, Percent_Identity=25.2354048964218, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI87081782, Length=387, Percent_Identity=26.3565891472868, Blast_Score=95, Evalue=9e-21, Organism=Escherichia coli, GI1787182, Length=222, Percent_Identity=31.0810810810811, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=29.4416243654822, Blast_Score=77, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17553372, Length=398, Percent_Identity=26.3819095477387, Blast_Score=89, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17559834, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565586, Length=239, Percent_Identity=27.6150627615063, Blast_Score=73, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6320874, Length=205, Percent_Identity=33.6585365853659, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6321121, Length=198, Percent_Identity=29.7979797979798, Blast_Score=88, Evalue=3e-18, Organism=Drosophila melanogaster, GI24641342, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 55502; Mature: 55370
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQILTLTDISYCYPGAPEPLFEHLSATFAAGWAAVLGDNGIGKTTLAKLACGMLSPDSG CCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC IVSPNPCKMAVAYCPQRTDETPTNLDDFVADWTGETIAIRDALNIGDDWAYRYETLSGGE CCCCCCHHHHEEECCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHEEEEECCCCC AKRLQIACALAGDPDVLVLDEPTNHVDGRTRQAITQAMRRFDGIGIVISHDVELIDATCS CEEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH RCVMLERRHARGRNITAANTYQGGYTQAAQQMRDNQRADTAAIQSTRKELQRMQRIKRER HHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AQRARELDMRKNQGMRIDIKDIDARKALKNLKPAIGTTVAQTSAQFDGRIAAATDRLAHL HHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEHHHHHHHHH SEAAKRYDGTIWMNVMPSSRRELTRIPNDHAIADQPDMLSIGPRDRIGISGPNGSGKTAL HHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHH IRRLIEALERDEAQRHSERMPYLYIPQNSSDMDTANAMNRLHALTDEQRAIVLSAYAQLN HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCC ADPDRLLAGGNPSPGELRKLLLCLGMIEQPQLIIMDEPTNHLDLHSKQALANTLSSYAGA CCHHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCE LVAVSHDEWFLNAVTSIRWRCAS EEEEECCHHHHHHHHHHHEEECC >Mature Secondary Structure SQILTLTDISYCYPGAPEPLFEHLSATFAAGWAAVLGDNGIGKTTLAKLACGMLSPDSG CCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC IVSPNPCKMAVAYCPQRTDETPTNLDDFVADWTGETIAIRDALNIGDDWAYRYETLSGGE CCCCCCHHHHEEECCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHEEEEECCCCC AKRLQIACALAGDPDVLVLDEPTNHVDGRTRQAITQAMRRFDGIGIVISHDVELIDATCS CEEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH RCVMLERRHARGRNITAANTYQGGYTQAAQQMRDNQRADTAAIQSTRKELQRMQRIKRER HHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AQRARELDMRKNQGMRIDIKDIDARKALKNLKPAIGTTVAQTSAQFDGRIAAATDRLAHL HHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEHHHHHHHHH SEAAKRYDGTIWMNVMPSSRRELTRIPNDHAIADQPDMLSIGPRDRIGISGPNGSGKTAL HHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHH IRRLIEALERDEAQRHSERMPYLYIPQNSSDMDTANAMNRLHALTDEQRAIVLSAYAQLN HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCC ADPDRLLAGGNPSPGELRKLLLCLGMIEQPQLIIMDEPTNHLDLHSKQALANTLSSYAGA CCHHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCE LVAVSHDEWFLNAVTSIRWRCAS EEEEECCHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]