| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is cpx [H]
Identifier: 213692489
GI number: 213692489
Start: 1770202
End: 1771566
Strand: Direct
Name: cpx [H]
Synonym: Blon_1618
Alternate gene names: 213692489
Gene position: 1770202-1771566 (Clockwise)
Preceding gene: 213692488
Following gene: 213692491
Centisome position: 62.49
GC content: 63.0
Gene sequence:
>1365_bases ATGTCAGAGAAGAAAACCAAGAATTCCGTATCCTTTGAGGCGCTGTCTTCGCTGGACGCGCCAGTATCCTTCTGGAAGGG CATTCCGTTCGGCCTGCAGCATGTGATGGCCATGTTCGTGGCGAACCTCGCCCCGATCTTCATCGTCGCCTCGGCCGCGA AAATGACCCCGGCCCAATCGGCCACCATCATCCAGGCCGGCCTTCTGGTTGCGGGCCTAGGCACCTGCCTGCAACTGTAC GGCGCGTGGCTCATCGGCTCGCGTCTGCCGATGGTCACCGGCATCTCCTTCACCTACGTGGCGGCCGCCGTGGCGATCTG CGCGGACAAGGGCTATGGCGCAGTGGTCGGCGCGGTAATGGTCGGCGGTCTGCTGGAACTCGTGCTGGGTTTGACGGCCA AGTATTGGCGTCGGTTCGTGCCGCCCATCGTCTCCGCCATCGTGGTCACGTCGATCGGCTTCTCGCTGCTCAACGTGGGT GCCACGAGCTTCGGCGGCGGCAGCGGAGCCAAGGACTTCGGTTCCTGGCAAAACCTAACGCTCGGGCTTATATCTTTGGT CGCCTGCCTGGCGTTCCAGCTGTTGATGAAGGGCACGGCCAAGCAGCTGTCCGTGCTGTTCGGCCTGGTAGTCGGCTATG TGGCGGCCATCTGCATGGGCAAGGTCGATTTCTCCGGTTTCCAGAACCTCGCCATCGTGTCCGTGCCGCAGTTCATGCCG TTCAAGCCTGAGTTCGACTGGGGTTCGATCATCTCCATCGGCCTGCTCTACGTCGTCTCCTCGGTCGAGGTGCTGGGTGA CACCGCCGCGCTGACCAAGGTGGGCCTGAACCGTACTCCCACCGAACGCGAGACCGCGGGCGCCATCGCCGGCGACGGCC TGATCTCCACCGTATCCGGCCTGTTCGGATGCCTGCCGCTGACCTCGTTCGCGCAGAACATCGGATTGGTGGCCATGACC AAGGTCGTCAACCGCAAGGTGATTCTCTCCGGCGGACTGATTCTGGTGCTGGCGAGCTTCGTGCCGGCCATCGCCGAGGT GTTCAACTCGCTGCCACAGGCGGTGCTCGGCGGCTGCACGATCATGATGTTCGGCAACATCATTCTTTCGGGCTTCCAGA TGATCGCCGAAGCGGGCTTCACGCAGCGCAACATCACGCTTGCGGCGCTTTCGCTGACCATCGGCATCGGCTTCACCCAG GTGAGCGACATCTTCGCGCAGTTCCCGACACTGTTCCAACAAATCTTCGCCTCGAACTGCATCGCCGTGGCGTTCGTGGT GGCCGTGATCCTGAACGCCGTGCTGCCCAGCGAGGAGCACTTCCTCTCCGCGCCCAAGGAGGCACCGGCCGCGGACGCCG AGTGA
Upstream 100 bases:
>100_bases TCGTCGAGTCCATGAATCCCGAGACCGGCGAAATCACATTTAGGCACTAAGCACATTGCCTGCTCCCGCCGGCGGGAGCA ACAGAGAGAAGAAGAGAATC
Downstream 100 bases:
>100_bases TAACAACGCGACATATCAGCTGCGCATAATCACATGATGATGCCCTATCGTCTTGCAGGATGATAGGGCATCATTGATTT TGAGAGAGACTACAAGTTGA
Product: Xanthine/uracil/vitamin C permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSEKKTKNSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQSATIIQAGLLVAGLGTCLQLY GAWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVMVGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVG ATSFGGGSGAKDFGSWQNLTLGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMP FKPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSGLFGCLPLTSFAQNIGLVAMT KVVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCTIMMFGNIILSGFQMIAEAGFTQRNITLAALSLTIGIGFTQ VSDIFAQFPTLFQQIFASNCIAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE
Sequences:
>Translated_454_residues MSEKKTKNSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQSATIIQAGLLVAGLGTCLQLY GAWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVMVGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVG ATSFGGGSGAKDFGSWQNLTLGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMP FKPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSGLFGCLPLTSFAQNIGLVAMT KVVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCTIMMFGNIILSGFQMIAEAGFTQRNITLAALSLTIGIGFTQ VSDIFAQFPTLFQQIFASNCIAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE >Mature_453_residues SEKKTKNSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQSATIIQAGLLVAGLGTCLQLYG AWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVMVGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVGA TSFGGGSGAKDFGSWQNLTLGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMPF KPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSGLFGCLPLTSFAQNIGLVAMTK VVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCTIMMFGNIILSGFQMIAEAGFTQRNITLAALSLTIGIGFTQV SDIFAQFPTLFQQIFASNCIAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE
Specific function: Unknown
COG id: COG2233
COG function: function code F; Xanthine/uracil permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082178, Length=454, Percent_Identity=30.8370044052863, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI87082181, Length=439, Percent_Identity=29.8405466970387, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI1790087, Length=428, Percent_Identity=29.6728971962617, Blast_Score=164, Evalue=8e-42, Organism=Escherichia coli, GI87081818, Length=417, Percent_Identity=28.0575539568345, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1788843, Length=387, Percent_Identity=26.8733850129199, Blast_Score=108, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017588 - InterPro: IPR006042 - InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 47232; Mature: 47101
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS01116 XANTH_URACIL_PERMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKKTKNSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQS CCCCCCCCCHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ATIIQAGLLVAGLGTCLQLYGAWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH VGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVGATSFGGGSGAKDFGSWQNLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH LGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMP HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC FKPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHCCHHHHHHHH LFGCLPLTSFAQNIGLVAMTKVVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCT HHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMMFGNIILSGFQMIAEAGFTQRNITLAALSLTIGIGFTQVSDIFAQFPTLFQQIFASNC HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH IAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE HHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure SEKKTKNSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQS CCCCCCCCHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ATIIQAGLLVAGLGTCLQLYGAWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH VGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVGATSFGGGSGAKDFGSWQNLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH LGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMP HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC FKPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHCCHHHHHHHH LFGCLPLTSFAQNIGLVAMTKVVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCT HHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMMFGNIILSGFQMIAEAGFTQRNITLAALSLTIGIGFTQVSDIFAQFPTLFQQIFASNC HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH IAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE HHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11792842; 8162194 [H]