| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692340
Identifier: 213692340
GI number: 213692340
Start: 1627791
End: 1630496
Strand: Direct
Name: 213692340
Synonym: Blon_1466
Alternate gene names: NA
Gene position: 1627791-1630496 (Clockwise)
Preceding gene: 213692337
Following gene: 213692342
Centisome position: 57.46
GC content: 56.43
Gene sequence:
>2706_bases ATGGCGGGGAGACGTGACTTTGGTTCGTACCGTCGAGCAGACGCGAATGGGGATAGCCGTGCTGCTCGTGTCCGATATCG GCTGGGGCGTGCTGCCGCTGTACTGGCGCACGCTATCCAGTATGAATGCCATCAGCGTGCTCGCGTATCGTTTGGTCGCC ACGTTGGCGGCCATGGTCGCGCTGTTGGTGGCGTTCTCCGGCCTGCCCACCGCGATTCCGCTGGCCACGTTCTCCTACGG CGTGCAGCACAGCCATTACCTGACCGTGAGTTTCATCCAATATCTCAACCCGCTGATCCAGTTCTGTGTGGCTGTGCTCC TGCTGCACGAACCGATGCGCGCGCAGGGCTATGCGGCGTTCATGGTGATTTGGGTCGCGATCGCGGTGTATTCGTTCGGC GCGATTTGGGCGTATTGGGAGCGGCTGAAGCCCCACGCACGTTAAGCGCTTCCTTAACTCCCCTCCCCGAATGCGATTAC CCAGTGGAAACAAGACTACATCAGACCAGTATGCACCGCCAAGCGGCGAGTAACACTCCACCCGCTACAATCAGCAGTAT GGTTGTTCCGCAAAAGCCAACGCTGGCTCAATTCGAGGTCATGTTCGAAGGCACACCGTTGATTCTTGAACGTGCCACCG ATTACTGGGAATCGGGCCGCGTGAGTTCGGTGCAGGAGATTGCGCCGCAGCTGTATCACGCGCAGGTGTCCGGCAGTGCC GATGACTGTTATGACGTTGACATCCGCCTCAGCAAAGACGCTCGCGGCGAGAACGCCAATGAAGCAAACACTGATGACCA AGCCACTACCAGCAGTAACAGCGACCACGAATCCACAACCGACGACAATTCGATTCGCATACAATCCGCCGCGTGCACCT GCCCGTATCAGAGAACACCATATTGCAAGCATATAGGTGCCGTGCTTTACGAACTGCGCAAACAGCTCATTGGCGCGCAC GGCAATCACCACAATGATGACACCGCCAACGCTCACGATGGTGTCATCGCACTCCCCCGCACCGTGCTGTATCCCATCCA GCAACACCTCGACACGCGCGCAGAGCAGGGCAAAGGCCATCTGCTGTTCCTGTGGTCCACCCAACTGCGCGAAGCCGCAA AGACGTTCTGCGCCCAGCCAGACGAAGAACGACCGCTAATCCCGCTGATCGACGCACAAACCATGCTCTCCGACACAATC CGCCGATGCCATGAACGTTTCATTATTCATATCAGTAAACACAGCGATGCGTACAGCAAATCATGTGACTACACAGAATT CATCAAAACCGTGCAGGCTATCGCGGGCAATGCCCTGCAATCCAGTGATTACGCGAGCGCATGCGGCAACCTGCGACTGT GCATACACGAAGTCCACGCGCTTCTGCTCTCGTCCGAGAACGATGATGGCTCCGAACCTTTGCTCACGCTTATGGATGAT CTGGCGATGCGCGTGCGATGCTATATGGAGAATGTGGCGGAATTCGCCGACTCCTCTACCGCCGGCAAGGCATTGAACAC CATTGCGCAGGCCGCGAACGACAAAGACATGCGGCAATGCGAACCATTGAACAGTATGTTGCTGATTTCCAGCGCGCTCG CTTTCGCCCAATATGACGACAAACGCATATGGGCCATTGACGTGATCGAGAACGCGATAACGCGTAATCTGGAATACTCG TTCAACGAAGAGAGCGAAGAAAGCGACGAGGACGACGAGGATGAGGATAACGAGGATACGAGCGAAGTAGACGACGAAAC CGACTTCATTTCGGATGAATCGTTACACGTATTGCAGTTGTTCACACTCATGAGCGCCTACGACCTATACGCTCTATCCA ACGATGACGCCGGACGCGAGCAGCTTCTGAAAGACTACCCGGAGTCAATGGCCCTCACGCTGATGAACGCTGCGAACATG ATTCATGAAGAGCGCTTGCGTTCCGCATACATGCTCGCACAAGGTTTCCTTCTGTCGAGCCGGGATATGGAAGATGTCGA TATCGATGCCCGGCATAACGGTCTGCTGCCGGACCTGCTGCCCCATGGATGGCATACCATCATGGAATGCTGCGCCGAGG GACTCAATGACGTTGGACTGCTCGCCAACGTGTATCGGTACTACATTCTTTCCTGCAACGACAGATCCGATACCCATTAC GTGAGTAAACTACGCAATCTGTTACGCATCTACGGCGGTCTTAGCGCAGAAGAATGGCATGACGTGGCTGATGGGCTGAC CAGAGATTGCGCCCGGAACATCATCGACCGCATCAAGTACCAGCCGGAAATAACCACCAAAGGCGGCACACAGCGCCACA GCAGTTGGCGCAATCCCGCTTATGAGAAGCTCATCGTGGATGAGCGGCTTTCGGACGCGGCCCTGACCTATTACGTCACC GTCGATTACCCGCCGCTGCCATTGCTGCGCACCATCGCCATCGAACACCCCGAATCGGCAAAATCGATAATCCTCGACGC GATGCCATACGGCACCATGGGCACGGCCGCGTTCCGGTTTACGGTGGAACGTGGCGTCGACAATACATTGACGGCACGCC GCGCCACATACCAGCAGATCGCCAAACAGCTGCGTCGTTTCGCCGCAGTGTTCGGCGATGAGGAGACCCGTGTGCTGGCA CACGAGATTGTCGAGCGTTATCCGAATCGTACTGCGTTGCGGGAGGAGCTGGCGTTTGCGTTGTAG
Upstream 100 bases:
>100_bases GTCCTGTGGAAAAGACTCTAACAATAACCGGTACTGTTCATCATCAGCAAGTCCAATATGCCATGTGACCAGGTGCGGGA CACTCATGTGATCAGTCGCT
Downstream 100 bases:
>100_bases TGACGACATTGGCAACGCGGTACGGCATTCGGCACATATCCATTGACTATGCAGAGAAATGCCAGCCTGTTCTTCGCTGA GATTCCTGATGATATTGGTC
Product: zinc finger, SWIM domain protein
Products: NA
Alternate protein names: Zinc Finger SWIM Domain Protein
Number of amino acids: Translated: 901; Mature: 900
Protein sequence:
>901_residues MAGRRDFGSYRRADANGDSRAARVRYRLGRAAAVLAHAIQYECHQRARVSFGRHVGGHGRAVGGVLRPAHRDSAGHVLLR RAAQPLPDREFHPISQPADPVLCGCAPAARTDARAGLCGVHGDLGRDRGVFVRRDLGVLGAAEAPRTLSASLTPLPECDY PVETRLHQTSMHRQAASNTPPATISSMVVPQKPTLAQFEVMFEGTPLILERATDYWESGRVSSVQEIAPQLYHAQVSGSA DDCYDVDIRLSKDARGENANEANTDDQATTSSNSDHESTTDDNSIRIQSAACTCPYQRTPYCKHIGAVLYELRKQLIGAH GNHHNDDTANAHDGVIALPRTVLYPIQQHLDTRAEQGKGHLLFLWSTQLREAAKTFCAQPDEERPLIPLIDAQTMLSDTI RRCHERFIIHISKHSDAYSKSCDYTEFIKTVQAIAGNALQSSDYASACGNLRLCIHEVHALLLSSENDDGSEPLLTLMDD LAMRVRCYMENVAEFADSSTAGKALNTIAQAANDKDMRQCEPLNSMLLISSALAFAQYDDKRIWAIDVIENAITRNLEYS FNEESEESDEDDEDEDNEDTSEVDDETDFISDESLHVLQLFTLMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANM IHEERLRSAYMLAQGFLLSSRDMEDVDIDARHNGLLPDLLPHGWHTIMECCAEGLNDVGLLANVYRYYILSCNDRSDTHY VSKLRNLLRIYGGLSAEEWHDVADGLTRDCARNIIDRIKYQPEITTKGGTQRHSSWRNPAYEKLIVDERLSDAALTYYVT VDYPPLPLLRTIAIEHPESAKSIILDAMPYGTMGTAAFRFTVERGVDNTLTARRATYQQIAKQLRRFAAVFGDEETRVLA HEIVERYPNRTALREELAFAL
Sequences:
>Translated_901_residues MAGRRDFGSYRRADANGDSRAARVRYRLGRAAAVLAHAIQYECHQRARVSFGRHVGGHGRAVGGVLRPAHRDSAGHVLLR RAAQPLPDREFHPISQPADPVLCGCAPAARTDARAGLCGVHGDLGRDRGVFVRRDLGVLGAAEAPRTLSASLTPLPECDY PVETRLHQTSMHRQAASNTPPATISSMVVPQKPTLAQFEVMFEGTPLILERATDYWESGRVSSVQEIAPQLYHAQVSGSA DDCYDVDIRLSKDARGENANEANTDDQATTSSNSDHESTTDDNSIRIQSAACTCPYQRTPYCKHIGAVLYELRKQLIGAH GNHHNDDTANAHDGVIALPRTVLYPIQQHLDTRAEQGKGHLLFLWSTQLREAAKTFCAQPDEERPLIPLIDAQTMLSDTI RRCHERFIIHISKHSDAYSKSCDYTEFIKTVQAIAGNALQSSDYASACGNLRLCIHEVHALLLSSENDDGSEPLLTLMDD LAMRVRCYMENVAEFADSSTAGKALNTIAQAANDKDMRQCEPLNSMLLISSALAFAQYDDKRIWAIDVIENAITRNLEYS FNEESEESDEDDEDEDNEDTSEVDDETDFISDESLHVLQLFTLMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANM IHEERLRSAYMLAQGFLLSSRDMEDVDIDARHNGLLPDLLPHGWHTIMECCAEGLNDVGLLANVYRYYILSCNDRSDTHY VSKLRNLLRIYGGLSAEEWHDVADGLTRDCARNIIDRIKYQPEITTKGGTQRHSSWRNPAYEKLIVDERLSDAALTYYVT VDYPPLPLLRTIAIEHPESAKSIILDAMPYGTMGTAAFRFTVERGVDNTLTARRATYQQIAKQLRRFAAVFGDEETRVLA HEIVERYPNRTALREELAFAL >Mature_900_residues AGRRDFGSYRRADANGDSRAARVRYRLGRAAAVLAHAIQYECHQRARVSFGRHVGGHGRAVGGVLRPAHRDSAGHVLLRR AAQPLPDREFHPISQPADPVLCGCAPAARTDARAGLCGVHGDLGRDRGVFVRRDLGVLGAAEAPRTLSASLTPLPECDYP VETRLHQTSMHRQAASNTPPATISSMVVPQKPTLAQFEVMFEGTPLILERATDYWESGRVSSVQEIAPQLYHAQVSGSAD DCYDVDIRLSKDARGENANEANTDDQATTSSNSDHESTTDDNSIRIQSAACTCPYQRTPYCKHIGAVLYELRKQLIGAHG NHHNDDTANAHDGVIALPRTVLYPIQQHLDTRAEQGKGHLLFLWSTQLREAAKTFCAQPDEERPLIPLIDAQTMLSDTIR RCHERFIIHISKHSDAYSKSCDYTEFIKTVQAIAGNALQSSDYASACGNLRLCIHEVHALLLSSENDDGSEPLLTLMDDL AMRVRCYMENVAEFADSSTAGKALNTIAQAANDKDMRQCEPLNSMLLISSALAFAQYDDKRIWAIDVIENAITRNLEYSF NEESEESDEDDEDEDNEDTSEVDDETDFISDESLHVLQLFTLMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANMI HEERLRSAYMLAQGFLLSSRDMEDVDIDARHNGLLPDLLPHGWHTIMECCAEGLNDVGLLANVYRYYILSCNDRSDTHYV SKLRNLLRIYGGLSAEEWHDVADGLTRDCARNIIDRIKYQPEITTKGGTQRHSSWRNPAYEKLIVDERLSDAALTYYVTV DYPPLPLLRTIAIEHPESAKSIILDAMPYGTMGTAAFRFTVERGVDNTLTARRATYQQIAKQLRRFAAVFGDEETRVLAH EIVERYPNRTALREELAFAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100507; Mature: 100376
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS50966 ZF_SWIM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRRDFGSYRRADANGDSRAARVRYRLGRAAAVLAHAIQYECHQRARVSFGRHVGGHGR CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AVGGVLRPAHRDSAGHVLLRRAAQPLPDREFHPISQPADPVLCGCAPAARTDARAGLCGV HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC HGDLGRDRGVFVRRDLGVLGAAEAPRTLSASLTPLPECDYPVETRLHQTSMHRQAASNTP CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC PATISSMVVPQKPTLAQFEVMFEGTPLILERATDYWESGRVSSVQEIAPQLYHAQVSGSA CHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC DDCYDVDIRLSKDARGENANEANTDDQATTSSNSDHESTTDDNSIRIQSAACTCPYQRTP CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEECCCCCCCC YCKHIGAVLYELRKQLIGAHGNHHNDDTANAHDGVIALPRTVLYPIQQHLDTRAEQGKGH HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC LLFLWSTQLREAAKTFCAQPDEERPLIPLIDAQTMLSDTIRRCHERFIIHISKHSDAYSK EEEEECHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHEEEEECCCCHHHC SCDYTEFIKTVQAIAGNALQSSDYASACGNLRLCIHEVHALLLSSENDDGSEPLLTLMDD CCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LAMRVRCYMENVAEFADSSTAGKALNTIAQAANDKDMRQCEPLNSMLLISSALAFAQYDD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCC KRIWAIDVIENAITRNLEYSFNEESEESDEDDEDEDNEDTSEVDDETDFISDESLHVLQL CEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCHHHHHH FTLMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANMIHEERLRSAYMLAQGFLLSS HHHHHHHHHEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RDMEDVDIDARHNGLLPDLLPHGWHTIMECCAEGLNDVGLLANVYRYYILSCNDRSDTHY CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHH VSKLRNLLRIYGGLSAEEWHDVADGLTRDCARNIIDRIKYQPEITTKGGTQRHSSWRNPA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCH YEKLIVDERLSDAALTYYVTVDYPPLPLLRTIAIEHPESAKSIILDAMPYGTMGTAAFRF HHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHEECCCCCCCCCCHHEEE TVERGVDNTLTARRATYQQIAKQLRRFAAVFGDEETRVLAHEIVERYPNRTALREELAFA EHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHC L C >Mature Secondary Structure AGRRDFGSYRRADANGDSRAARVRYRLGRAAAVLAHAIQYECHQRARVSFGRHVGGHGR CCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AVGGVLRPAHRDSAGHVLLRRAAQPLPDREFHPISQPADPVLCGCAPAARTDARAGLCGV HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC HGDLGRDRGVFVRRDLGVLGAAEAPRTLSASLTPLPECDYPVETRLHQTSMHRQAASNTP CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC PATISSMVVPQKPTLAQFEVMFEGTPLILERATDYWESGRVSSVQEIAPQLYHAQVSGSA CHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC DDCYDVDIRLSKDARGENANEANTDDQATTSSNSDHESTTDDNSIRIQSAACTCPYQRTP CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEECCCCCCCC YCKHIGAVLYELRKQLIGAHGNHHNDDTANAHDGVIALPRTVLYPIQQHLDTRAEQGKGH HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC LLFLWSTQLREAAKTFCAQPDEERPLIPLIDAQTMLSDTIRRCHERFIIHISKHSDAYSK EEEEECHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHEEEEECCCCHHHC SCDYTEFIKTVQAIAGNALQSSDYASACGNLRLCIHEVHALLLSSENDDGSEPLLTLMDD CCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LAMRVRCYMENVAEFADSSTAGKALNTIAQAANDKDMRQCEPLNSMLLISSALAFAQYDD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCC KRIWAIDVIENAITRNLEYSFNEESEESDEDDEDEDNEDTSEVDDETDFISDESLHVLQL CEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCHHHHHH FTLMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANMIHEERLRSAYMLAQGFLLSS HHHHHHHHHEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RDMEDVDIDARHNGLLPDLLPHGWHTIMECCAEGLNDVGLLANVYRYYILSCNDRSDTHY CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHH VSKLRNLLRIYGGLSAEEWHDVADGLTRDCARNIIDRIKYQPEITTKGGTQRHSSWRNPA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCH YEKLIVDERLSDAALTYYVTVDYPPLPLLRTIAIEHPESAKSIILDAMPYGTMGTAAFRF HHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHEECCCCCCCCCCHHEEE TVERGVDNTLTARRATYQQIAKQLRRFAAVFGDEETRVLAHEIVERYPNRTALREELAFA EHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA