| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692338
Identifier: 213692338
GI number: 213692338
Start: 1624929
End: 1626851
Strand: Reverse
Name: 213692338
Synonym: Blon_1464
Alternate gene names: NA
Gene position: 1626851-1624929 (Counterclockwise)
Preceding gene: 213692339
Following gene: 213692335
Centisome position: 57.43
GC content: 53.67
Gene sequence:
>1923_bases ATGACTGCCCATTTCGACGAGTTCGAAGAGGAGATGACCTCCCGCAGCCTGGAGCGAGCATATGATTACGTGGACGAGCA TAGAATCGGTGGGTTAGAGGAATTGTCGGCCGGACTATTCCACGCCGAAGTGCACGGTTCTGAACTCTACGATGTCGATA TTCGACTTCGTGGCAACGATATCGTGTTCGCATCCTGCACCTGCCCCTACGACTATGACGGATACTGCAAGCATATTGGT GCGGCGCTCTTGACGTTGCGTGATTACAAACACGGCGGTAATCATCAGCAGAACGTGACATACGATGCGATGATTGCAAA GCAGGACGACTCTCGGCCAGACATACCCGTAGCAGCAAATCCTCTCGCATCGAAACCTGAAGTGTTCAATCGAGTGCTGC AACATATTCGAGAACGAGTGGGACTGCGCAAATCAGAACGGTGGACGCCCGCTCAGCATTTCTATCTGGTTTGGAATCAG GACGAAATCAATGCCATCGTGACTGCGAATCCGGCAATCGCGAGCGGCATGGAACCATTGATGCCCGAAAGCACCGTGAA TCGCGTCATGGAATCTCCCATGCGGCGACATCTCGGCAAGGACTACGGCTGGAAATTCGAATGGGGAGATGCCGCCATAA ACGGCGTGATGGCCGTATTCGAGGAAGCAGAACAATCGAACGACTATCCGCTGGCCATGAGACGCATGTGCGCGGCTTTG CGAAAAACAGTGTGGTTCGCGAGACAAGTCGATGATGAAGAGGGTGCGCTACAGACATATATCGAACACCTCAATGAGCG GATCCTCGCTTATACGTATGCCGCGGCACCAATCGTTACAGGCGAGCAAGCGCAGCAGATGCTGATTGCAGCGTTGAGAT TCATGCGTGATACCCCTATGATCGAGATGCTGTTTTGGCCGCACACGCCGCTGGAATGCGTCATCCCATTCGCGGATATT CACGCACGAGGTACGGCGGACATAGAACAGATGGAGCATCAGCCCCGCGAGATCGGCACGACCTCGTTCATGTGCCGCAC CTATGCGCAGTCCACATTGAATGTTGCCCAGCAATTCCTTCATGACAAGAAGGGGGATTCCATTGACGGCCATCGAACGA ACCTGACCGATTACGATTGGCGAGCTGCACAGGACTATCTGATGAAACTCCATCATGACTTTCTGCTGTACGGCGGCGAC GCAATTAGTGCCGATGAGCTACTGTCCAAAAACACGGACGTGGCCGAATGCAGATTTGCCGTCATCGCACGTAAATTCCT GGACGGGGATTATGCCGGGGCCGCCGTTTTCTTGGAACAGACTTACGATTGGGATGCCGCGCAAAAGCATGCGGGGTATT GGGAGCTCACCGCTCAACTGCCGCATGGCGAGCTTACCATGCTGGAGGCCTGCTATGAACGACTGAACGATGAGAACGGC ATCAAACAATTATATGAGTACTACGTCGCTCACAGTGATTCAGTGGCGGACGAACGTTGCATTCCCATCCTCAAATCGAT GGTCGGCAAATCGGGCTGGCCTCAAAGCGTTCAGAACATTCTGCGCAACTATCATGAGCATGATTTCGGTGGGAAAGTCC TTGCACGACTCATGACTGAAGAGCGCCTATCCGATGAGGCCTTGGCCTTAGCCGGGCAGCGGCCGGAACTCCTGCGTGAT TTGCTCAAGCCCATCAGCCTCAATCACAGCGCGGAAGCAGAACGACTGATCAGAAAGCAGCTGCCGCTGGATCGCGATCT GCAACAGGGAAATCGCAACGAATACCGATTCGTTGCCATGTGGATCGAGCAATATCGCAACGTTTTCGGACTCGACCAAG CCAAGGCTCTCGCCAAGGAGATCATGGCAAAGTACCCGAGACGGTATGCTCTCAAAGAGGAAATCGGCCGCGTGCTAAAG TAA
Upstream 100 bases:
>100_bases CATGATGTTGCATGGGTGATGCTGAACAGATGATAGCCGAACTGCATTAGGCTACTACGTCCCACACCGTAATGTATGAC CAATCATTAGGAGGCCCGTC
Downstream 100 bases:
>100_bases CTTACTGATGCCAAAACATTCTAACACTACTCCGACGATGCCCGCCACCGCCCGGCCACAAGAATGCACGCAATACCGAA TACGCGCAGCGCGCCGCCTT
Product: zinc finger, SWIM domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MTAHFDEFEEEMTSRSLERAYDYVDEHRIGGLEELSAGLFHAEVHGSELYDVDIRLRGNDIVFASCTCPYDYDGYCKHIG AALLTLRDYKHGGNHQQNVTYDAMIAKQDDSRPDIPVAANPLASKPEVFNRVLQHIRERVGLRKSERWTPAQHFYLVWNQ DEINAIVTANPAIASGMEPLMPESTVNRVMESPMRRHLGKDYGWKFEWGDAAINGVMAVFEEAEQSNDYPLAMRRMCAAL RKTVWFARQVDDEEGALQTYIEHLNERILAYTYAAAPIVTGEQAQQMLIAALRFMRDTPMIEMLFWPHTPLECVIPFADI HARGTADIEQMEHQPREIGTTSFMCRTYAQSTLNVAQQFLHDKKGDSIDGHRTNLTDYDWRAAQDYLMKLHHDFLLYGGD AISADELLSKNTDVAECRFAVIARKFLDGDYAGAAVFLEQTYDWDAAQKHAGYWELTAQLPHGELTMLEACYERLNDENG IKQLYEYYVAHSDSVADERCIPILKSMVGKSGWPQSVQNILRNYHEHDFGGKVLARLMTEERLSDEALALAGQRPELLRD LLKPISLNHSAEAERLIRKQLPLDRDLQQGNRNEYRFVAMWIEQYRNVFGLDQAKALAKEIMAKYPRRYALKEEIGRVLK
Sequences:
>Translated_640_residues MTAHFDEFEEEMTSRSLERAYDYVDEHRIGGLEELSAGLFHAEVHGSELYDVDIRLRGNDIVFASCTCPYDYDGYCKHIG AALLTLRDYKHGGNHQQNVTYDAMIAKQDDSRPDIPVAANPLASKPEVFNRVLQHIRERVGLRKSERWTPAQHFYLVWNQ DEINAIVTANPAIASGMEPLMPESTVNRVMESPMRRHLGKDYGWKFEWGDAAINGVMAVFEEAEQSNDYPLAMRRMCAAL RKTVWFARQVDDEEGALQTYIEHLNERILAYTYAAAPIVTGEQAQQMLIAALRFMRDTPMIEMLFWPHTPLECVIPFADI HARGTADIEQMEHQPREIGTTSFMCRTYAQSTLNVAQQFLHDKKGDSIDGHRTNLTDYDWRAAQDYLMKLHHDFLLYGGD AISADELLSKNTDVAECRFAVIARKFLDGDYAGAAVFLEQTYDWDAAQKHAGYWELTAQLPHGELTMLEACYERLNDENG IKQLYEYYVAHSDSVADERCIPILKSMVGKSGWPQSVQNILRNYHEHDFGGKVLARLMTEERLSDEALALAGQRPELLRD LLKPISLNHSAEAERLIRKQLPLDRDLQQGNRNEYRFVAMWIEQYRNVFGLDQAKALAKEIMAKYPRRYALKEEIGRVLK >Mature_639_residues TAHFDEFEEEMTSRSLERAYDYVDEHRIGGLEELSAGLFHAEVHGSELYDVDIRLRGNDIVFASCTCPYDYDGYCKHIGA ALLTLRDYKHGGNHQQNVTYDAMIAKQDDSRPDIPVAANPLASKPEVFNRVLQHIRERVGLRKSERWTPAQHFYLVWNQD EINAIVTANPAIASGMEPLMPESTVNRVMESPMRRHLGKDYGWKFEWGDAAINGVMAVFEEAEQSNDYPLAMRRMCAALR KTVWFARQVDDEEGALQTYIEHLNERILAYTYAAAPIVTGEQAQQMLIAALRFMRDTPMIEMLFWPHTPLECVIPFADIH ARGTADIEQMEHQPREIGTTSFMCRTYAQSTLNVAQQFLHDKKGDSIDGHRTNLTDYDWRAAQDYLMKLHHDFLLYGGDA ISADELLSKNTDVAECRFAVIARKFLDGDYAGAAVFLEQTYDWDAAQKHAGYWELTAQLPHGELTMLEACYERLNDENGI KQLYEYYVAHSDSVADERCIPILKSMVGKSGWPQSVQNILRNYHEHDFGGKVLARLMTEERLSDEALALAGQRPELLRDL LKPISLNHSAEAERLIRKQLPLDRDLQQGNRNEYRFVAMWIEQYRNVFGLDQAKALAKEIMAKYPRRYALKEEIGRVLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73432; Mature: 73301
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS50966 ZF_SWIM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAHFDEFEEEMTSRSLERAYDYVDEHRIGGLEELSAGLFHAEVHGSELYDVDIRLRGND CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEEEEEEEECCE IVFASCTCPYDYDGYCKHIGAALLTLRDYKHGGNHQQNVTYDAMIAKQDDSRPDIPVAAN EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHEEECCCCCCCCCCCCCC PLASKPEVFNRVLQHIRERVGLRKSERWTPAQHFYLVWNQDEINAIVTANPAIASGMEPL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHCCCCCC MPESTVNRVMESPMRRHLGKDYGWKFEWGDAAINGVMAVFEEAEQSNDYPLAMRRMCAAL CCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RKTVWFARQVDDEEGALQTYIEHLNERILAYTYAAAPIVTGEQAQQMLIAALRFMRDTPM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC IEMLFWPHTPLECVIPFADIHARGTADIEQMEHQPREIGTTSFMCRTYAQSTLNVAQQFL EEEEECCCCCHHHEECHHHHCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHH HDKKGDSIDGHRTNLTDYDWRAAQDYLMKLHHDFLLYGGDAISADELLSKNTDVAECRFA HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCHHHHHHH VIARKFLDGDYAGAAVFLEQTYDWDAAQKHAGYWELTAQLPHGELTMLEACYERLNDENG HHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCH IKQLYEYYVAHSDSVADERCIPILKSMVGKSGWPQSVQNILRNYHEHDFGGKVLARLMTE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH ERLSDEALALAGQRPELLRDLLKPISLNHSAEAERLIRKQLPLDRDLQQGNRNEYRFVAM HHCCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHH WIEQYRNVFGLDQAKALAKEIMAKYPRRYALKEEIGRVLK HHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure TAHFDEFEEEMTSRSLERAYDYVDEHRIGGLEELSAGLFHAEVHGSELYDVDIRLRGND CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCEEEEEEEEEECCE IVFASCTCPYDYDGYCKHIGAALLTLRDYKHGGNHQQNVTYDAMIAKQDDSRPDIPVAAN EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHEEECCCCCCCCCCCCCC PLASKPEVFNRVLQHIRERVGLRKSERWTPAQHFYLVWNQDEINAIVTANPAIASGMEPL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHCCCCCC MPESTVNRVMESPMRRHLGKDYGWKFEWGDAAINGVMAVFEEAEQSNDYPLAMRRMCAAL CCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RKTVWFARQVDDEEGALQTYIEHLNERILAYTYAAAPIVTGEQAQQMLIAALRFMRDTPM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC IEMLFWPHTPLECVIPFADIHARGTADIEQMEHQPREIGTTSFMCRTYAQSTLNVAQQFL EEEEECCCCCHHHEECHHHHCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHH HDKKGDSIDGHRTNLTDYDWRAAQDYLMKLHHDFLLYGGDAISADELLSKNTDVAECRFA HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCHHHHHHH VIARKFLDGDYAGAAVFLEQTYDWDAAQKHAGYWELTAQLPHGELTMLEACYERLNDENG HHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCH IKQLYEYYVAHSDSVADERCIPILKSMVGKSGWPQSVQNILRNYHEHDFGGKVLARLMTE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH ERLSDEALALAGQRPELLRDLLKPISLNHSAEAERLIRKQLPLDRDLQQGNRNEYRFVAM HHCCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHH WIEQYRNVFGLDQAKALAKEIMAKYPRRYALKEEIGRVLK HHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA