| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692290
Identifier: 213692290
GI number: 213692290
Start: 1574275
End: 1575477
Strand: Direct
Name: 213692290
Synonym: Blon_1412
Alternate gene names: NA
Gene position: 1574275-1575477 (Clockwise)
Preceding gene: 213692284
Following gene: 213692296
Centisome position: 55.57
GC content: 66.67
Gene sequence:
>1203_bases ATGATGACCCCGGACGACATCGACGTGTGGGTCGGCCTGGACGTGGGCAAGAGCGCGCACCACGCGCACGCCCTCGACCA TGACGGGAACACCCTGTACGACAAGCCGTTGAAACAGGACGAGAAGGCCATCCGCACGATGCTGGGCAAGCTCTCCAAGC ATGGCCGTGTGCTGCTGGTCGTGGACCAGCCCAACACCATCGGCTCCCTGCCCCTGACGGTGGCGCGGAACATGGGGATC GCGGTTGCCTACCTTCCCGGCACGGCCATGCGCAGGACCGCGCAGCTGCTGCCCGGGGACGCGAAGACCGACCGCAGGGA CGCGCATGTGATCGCGTGGGCCGCGCTCAAGCTGCCCGAGACGCTCAGGGACGCGGGCCCGGATGACGAGACCCTCGCCG CCCTGAAGCTGCTCGCCGGCCACGACGAGGACCTCGCCCACGAATCCACCCGCCACGTCAACCGCCTGCGGAGCCTGCTG CTGCAGACCCACCCCGCGTTCGAACGCGCGCTCAAGGGCGAGAGAATCACGCGCGACGCGACGCTCGCGCTGCTCGAACG ATACGGCGGGCCCATGGGCGTGAAACGGGCCGGGATCGAGGACGTGAAGGACTGGGCCAAGTCCAACGGGCTTCGCGCCG GCCGCATCATCGACGACATGTTCAAGGCGATCGGCGAGCAGACCGTCACCGTGCCCGGCACCCTCATGGCCGAGACCATC ATCCCCTCCATCGCCCACGACATCAAGACGATCAGGGACCGGCGGCGCGAGGTCGGCCGCCAGGTCGAGAAGCTCCTGGA GGACCACCCTCTTCTCACGGTCCTGACGTCGATGCCCGGGATAGGCGTCAGGACCGCAAGCAACATCCTGCTCGGCATCG GCGGCGACATCGCCAACTTCAAATCGTCCGCCCATCTGGCCGCCTACGCGGGCATATCGCCCGTCACCGGCCAATCCGGC ACCAGCATCAAAGGCGAACGGCCCTCCAGGCGGGGCAACAAACGCCTCAAGAACGCGCTGTGGCAGACCGCGTTCGTCGC ATCCACCAAACACCCGCCCTCCGTGGCCTATTACAAGCGCAAACGCGAACAGGGCAAACACCACAACGCCGCCATCATCT GCCTCGCGCGTCGGCGCTGCGACGTGATCTACAGCATGCTCAAAAACGGAACCCTCTACCAGGAACCAGCCCTCGTAGCC TGA
Upstream 100 bases:
>100_bases GGGCGCATGGCGCAGGTCTCGTCGTAATGTGGGTGCGGCGCGGGCGTCCGGACTCCTCCGAGCCCGCGGCGACCGGAAAA CCTTCATGACGGGAGGAACG
Downstream 100 bases:
>100_bases ACCGGGCCACACGGGAAAGGACGCCGGACGCCACCGGCAGGGCGAAGCGCGCCCACGACAGCCAACCGGAATCCCGACAC GTCAACTCCCCAAGGAGTTG
Product: transposase IS116/IS110/IS902 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MMTPDDIDVWVGLDVGKSAHHAHALDHDGNTLYDKPLKQDEKAIRTMLGKLSKHGRVLLVVDQPNTIGSLPLTVARNMGI AVAYLPGTAMRRTAQLLPGDAKTDRRDAHVIAWAALKLPETLRDAGPDDETLAALKLLAGHDEDLAHESTRHVNRLRSLL LQTHPAFERALKGERITRDATLALLERYGGPMGVKRAGIEDVKDWAKSNGLRAGRIIDDMFKAIGEQTVTVPGTLMAETI IPSIAHDIKTIRDRRREVGRQVEKLLEDHPLLTVLTSMPGIGVRTASNILLGIGGDIANFKSSAHLAAYAGISPVTGQSG TSIKGERPSRRGNKRLKNALWQTAFVASTKHPPSVAYYKRKREQGKHHNAAIICLARRRCDVIYSMLKNGTLYQEPALVA
Sequences:
>Translated_400_residues MMTPDDIDVWVGLDVGKSAHHAHALDHDGNTLYDKPLKQDEKAIRTMLGKLSKHGRVLLVVDQPNTIGSLPLTVARNMGI AVAYLPGTAMRRTAQLLPGDAKTDRRDAHVIAWAALKLPETLRDAGPDDETLAALKLLAGHDEDLAHESTRHVNRLRSLL LQTHPAFERALKGERITRDATLALLERYGGPMGVKRAGIEDVKDWAKSNGLRAGRIIDDMFKAIGEQTVTVPGTLMAETI IPSIAHDIKTIRDRRREVGRQVEKLLEDHPLLTVLTSMPGIGVRTASNILLGIGGDIANFKSSAHLAAYAGISPVTGQSG TSIKGERPSRRGNKRLKNALWQTAFVASTKHPPSVAYYKRKREQGKHHNAAIICLARRRCDVIYSMLKNGTLYQEPALVA >Mature_400_residues MMTPDDIDVWVGLDVGKSAHHAHALDHDGNTLYDKPLKQDEKAIRTMLGKLSKHGRVLLVVDQPNTIGSLPLTVARNMGI AVAYLPGTAMRRTAQLLPGDAKTDRRDAHVIAWAALKLPETLRDAGPDDETLAALKLLAGHDEDLAHESTRHVNRLRSLL LQTHPAFERALKGERITRDATLALLERYGGPMGVKRAGIEDVKDWAKSNGLRAGRIIDDMFKAIGEQTVTVPGTLMAETI IPSIAHDIKTIRDRRREVGRQVEKLLEDHPLLTVLTSMPGIGVRTASNILLGIGGDIANFKSSAHLAAYAGISPVTGQSG TSIKGERPSRRGNKRLKNALWQTAFVASTKHPPSVAYYKRKREQGKHHNAAIICLARRRCDVIYSMLKNGTLYQEPALVA
Specific function: Unknown
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 43808; Mature: 43808
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTPDDIDVWVGLDVGKSAHHAHALDHDGNTLYDKPLKQDEKAIRTMLGKLSKHGRVLLV CCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE VDQPNTIGSLPLTVARNMGIAVAYLPGTAMRRTAQLLPGDAKTDRRDAHVIAWAALKLPE EECCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCH TLRDAGPDDETLAALKLLAGHDEDLAHESTRHVNRLRSLLLQTHPAFERALKGERITRDA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHH TLALLERYGGPMGVKRAGIEDVKDWAKSNGLRAGRIIDDMFKAIGEQTVTVPGTLMAETI HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHH IPSIAHDIKTIRDRRREVGRQVEKLLEDHPLLTVLTSMPGIGVRTASNILLGIGGDIANF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEECCCCEEEECCCCHHHH KSSAHLAAYAGISPVTGQSGTSIKGERPSRRGNKRLKNALWQTAFVASTKHPPSVAYYKR CCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KREQGKHHNAAIICLARRRCDVIYSMLKNGTLYQEPALVA HHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCCCCC >Mature Secondary Structure MMTPDDIDVWVGLDVGKSAHHAHALDHDGNTLYDKPLKQDEKAIRTMLGKLSKHGRVLLV CCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE VDQPNTIGSLPLTVARNMGIAVAYLPGTAMRRTAQLLPGDAKTDRRDAHVIAWAALKLPE EECCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCH TLRDAGPDDETLAALKLLAGHDEDLAHESTRHVNRLRSLLLQTHPAFERALKGERITRDA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHH TLALLERYGGPMGVKRAGIEDVKDWAKSNGLRAGRIIDDMFKAIGEQTVTVPGTLMAETI HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHH IPSIAHDIKTIRDRRREVGRQVEKLLEDHPLLTVLTSMPGIGVRTASNILLGIGGDIANF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEECCCCEEEECCCCHHHH KSSAHLAAYAGISPVTGQSGTSIKGERPSRRGNKRLKNALWQTAFVASTKHPPSVAYYKR CCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KREQGKHHNAAIICLARRRCDVIYSMLKNGTLYQEPALVA HHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2821490; 12000953 [H]