BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is srtF [H]

Identifier: 213692289

GI number: 213692289

Start: 1573106

End: 1573762

Strand: Reverse

Name: srtF [H]

Synonym: Blon_1411

Alternate gene names: 213692289

Gene position: 1573762-1573106 (Counterclockwise)

Preceding gene: 213692291

Following gene: 213692288

Centisome position: 55.56

GC content: 59.21

Gene sequence:

>657_bases
ATGCCAGTTATATCGGCTACGAATCTCTCGATCGGGTACAAGGGTTCCCCAATCGTCAGCAACATTAACCTGCGGTTGAG
CACGGGTAGGATCATCTGTCTGCTTGGGGCAAACGGCGCGGGCAAAACCACGTTGATGAAGACGCTACTCGGACGGATAA
AGCCCGTGAGCGGAGAGGTCACGTACACAGGGACGAATATCAATGAGATGTCCGCGGCGATAGACCATCCCAGTTTCTTT
CCTTACCTGAGTGGTAGAGAGAACGTCGAGGTGGTCTCCGCGTTCTGGGGTCTGGATGTGGACCCGGAGGCGGCGTTGGA
CGGTGTGGGCATCAATCGCGCGGTGTATGGGCGGAAGGCGAAGGACTACTCGACGGGCATGAAAGAGCGTCTGGAGCTGT
GCCTCGCCCTTGTGCCGCATCCGAGGTTCCTGTTCCTCGACGAGCCGCAGAACGGTCTGGACCCCGATGGCATAGCCTCC
TTGTCCGAAACGCTTCGCGCCTACCGGGACAAGGGGAACTGCGTCGTCATCTCCACGCATCTGCTTCATGAGATCCAGGG
CGTCCCGGACGAGTGCATCATGATTCGTCACGGCCGGGCCGTGCAGGTCACGGATCTGACCGGGGTGAACCTCGCGGATC
TGTATCAGGGGAGGTAG

Upstream 100 bases:

>100_bases
GCGGCCGCTGAAGGGTAAAATGGCGGCGACATTGCAACGCGCGGGTCTGGGCAAGGCATCCTGCCTTTGCCTTCAGGCCC
GCCTTTCGTGAAGGGTGATT

Downstream 100 bases:

>100_bases
GGTCTTGAACGCCGTTTCCCCTGTTCGCGCGTTGGTCGCCTACTACTGGAACACGTGGTATTTCCTCGCCGCGGTGTTTG
GGGCCGTCTCGTCCCTTCTG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPVISATNLSIGYKGSPIVSNINLRLSTGRIICLLGANGAGKTTLMKTLLGRIKPVSGEVTYTGTNINEMSAAIDHPSFF
PYLSGRENVEVVSAFWGLDVDPEAALDGVGINRAVYGRKAKDYSTGMKERLELCLALVPHPRFLFLDEPQNGLDPDGIAS
LSETLRAYRDKGNCVVISTHLLHEIQGVPDECIMIRHGRAVQVTDLTGVNLADLYQGR

Sequences:

>Translated_218_residues
MPVISATNLSIGYKGSPIVSNINLRLSTGRIICLLGANGAGKTTLMKTLLGRIKPVSGEVTYTGTNINEMSAAIDHPSFF
PYLSGRENVEVVSAFWGLDVDPEAALDGVGINRAVYGRKAKDYSTGMKERLELCLALVPHPRFLFLDEPQNGLDPDGIAS
LSETLRAYRDKGNCVVISTHLLHEIQGVPDECIMIRHGRAVQVTDLTGVNLADLYQGR
>Mature_217_residues
PVISATNLSIGYKGSPIVSNINLRLSTGRIICLLGANGAGKTTLMKTLLGRIKPVSGEVTYTGTNINEMSAAIDHPSFFP
YLSGRENVEVVSAFWGLDVDPEAALDGVGINRAVYGRKAKDYSTGMKERLELCLALVPHPRFLFLDEPQNGLDPDGIASL
SETLRAYRDKGNCVVISTHLLHEIQGVPDECIMIRHGRAVQVTDLTGVNLADLYQGR

Specific function: Implicated in the export process of the lantibiotic SrtA (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=28.8288288288288, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=31.7535545023697, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI6005701, Length=223, Percent_Identity=29.1479820627803, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI105990541, Length=198, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI21536376, Length=195, Percent_Identity=32.3076923076923, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI153792144, Length=227, Percent_Identity=28.6343612334802, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI31657092, Length=214, Percent_Identity=27.5700934579439, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=26.9767441860465, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=26.9767441860465, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI30795238, Length=204, Percent_Identity=27.9411764705882, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI27436953, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI27881501, Length=204, Percent_Identity=27.9411764705882, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=28.4313725490196, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27262624, Length=192, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI27262626, Length=192, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1789751, Length=213, Percent_Identity=31.924882629108, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=25.5813953488372, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081782, Length=198, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787041, Length=213, Percent_Identity=30.0469483568075, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=25.5707762557078, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=26.0663507109005, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=25.1101321585903, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=25.9090909090909, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=23.963133640553, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=27.7511961722488, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082268, Length=221, Percent_Identity=25.3393665158371, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI48994943, Length=204, Percent_Identity=27.9411764705882, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=25.2336448598131, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=22.5806451612903, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1790739, Length=211, Percent_Identity=26.5402843601896, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=25.9803921568627, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=24.4239631336406, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=24.5192307692308, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=29.5566502463054, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786698, Length=213, Percent_Identity=24.4131455399061, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786872, Length=218, Percent_Identity=25.6880733944954, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI1788506, Length=238, Percent_Identity=24.7899159663866, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=198, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17559834, Length=220, Percent_Identity=27.7272727272727, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=27.4038461538462, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=188, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=216, Percent_Identity=26.3888888888889, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=208, Percent_Identity=27.4038461538462, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6325030, Length=181, Percent_Identity=28.7292817679558, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=212, Percent_Identity=29.7169811320755, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI221500365, Length=212, Percent_Identity=29.7169811320755, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28573571, Length=211, Percent_Identity=24.6445497630332, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573573, Length=195, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28574150, Length=198, Percent_Identity=26.7676767676768, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007328, Length=198, Percent_Identity=26.7676767676768, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666092, Length=203, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24666836, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643674, Length=194, Percent_Identity=26.2886597938144, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24641342, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR022501
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23596; Mature: 23465

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVISATNLSIGYKGSPIVSNINLRLSTGRIICLLGANGAGKTTLMKTLLGRIKPVSGEV
CCCEECCCEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEE
TYTGTNINEMSAAIDHPSFFPYLSGRENVEVVSAFWGLDVDPEAALDGVGINRAVYGRKA
EEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHCCCCC
KDYSTGMKERLELCLALVPHPRFLFLDEPQNGLDPDGIASLSETLRAYRDKGNCVVISTH
CHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
LLHEIQGVPDECIMIRHGRAVQVTDLTGVNLADLYQGR
HHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHCCCC
>Mature Secondary Structure 
PVISATNLSIGYKGSPIVSNINLRLSTGRIICLLGANGAGKTTLMKTLLGRIKPVSGEV
CCEECCCEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEE
TYTGTNINEMSAAIDHPSFFPYLSGRENVEVVSAFWGLDVDPEAALDGVGINRAVYGRKA
EEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHCCCCC
KDYSTGMKERLELCLALVPHPRFLFLDEPQNGLDPDGIASLSETLRAYRDKGNCVVISTH
CHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
LLHEIQGVPDECIMIRHGRAVQVTDLTGVNLADLYQGR
HHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]