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The map label for this gene is algU [H]

Identifier: 213692279

GI number: 213692279

Start: 1565764

End: 1566315

Strand: Direct

Name: algU [H]

Synonym: Blon_1401

Alternate gene names: 213692279

Gene position: 1565764-1566315 (Clockwise)

Preceding gene: 213692278

Following gene: 213692280

Centisome position: 55.27

GC content: 69.57

Gene sequence:

>552_bases
ATGACCTCGCCCGGTGGGGCGGTGATGCGCGACGAGGATCTGCTCGCGCGGGTCGCCTCCGGGGACGAACGCGCCTTCGA
GACCCTGTATGGGCGTCACGCTGCGGCGGTGCGGGCGCTCGTGCGCGTGCGCGTGCCGGATGCCGGCACGGCCGAGGAGG
TGTGCGCCGACGTCTGGCTGGGCTGCTGGCGGTCGGCGAGGGCGTTCCGTGGTGATGCGAAGGTGCTGTCCTGGCTGCTG
GGCATCGCGAAACGGCAGATCTACATGCGCGTGCGGCGCGTACGCCCGAATGTGACCGCGTTGGACGATGCGCCCGAACC
GCGTGACGATGGACCGAGTCCGGAGACGGCCGTGCTGTCCGAAGCGGGCGTGGATGATCTGATGGCGTTGTTGCGCCGGC
TGCCCGTCGAACTGGTGGAGACGGCCACGTTGGCGTGGCTGCACGGCCTGTCGTACCGGCAGATCGCCGATTTGTCGGAC
GTGCCGGAAGGCACGGTCAAATCCCGTATCTCGCGTGCGCGCCGTCTGCTGCGCGCGCAACTCGACCGCTAA

Upstream 100 bases:

>100_bases
CGTTGCTCGTGTCGTGAACCGTCGGTTCGTTTCTAGCTACATACATCAATGAACGTTTGTTTACGATGTGCCGTGGAAGG
AGCCGCATACGCAGGATGAC

Downstream 100 bases:

>100_bases
AACGATGCGGATGGAAAGGAACGGTGAATCCTGATGACCGATCATCTTGACGAAACGATCGACCGTTTGACGGACGAGAC
GCCCGACGGGCGTCTGCTTG

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTSPGGAVMRDEDLLARVASGDERAFETLYGRHAAAVRALVRVRVPDAGTAEEVCADVWLGCWRSARAFRGDAKVLSWLL
GIAKRQIYMRVRRVRPNVTALDDAPEPRDDGPSPETAVLSEAGVDDLMALLRRLPVELVETATLAWLHGLSYRQIADLSD
VPEGTVKSRISRARRLLRAQLDR

Sequences:

>Translated_183_residues
MTSPGGAVMRDEDLLARVASGDERAFETLYGRHAAAVRALVRVRVPDAGTAEEVCADVWLGCWRSARAFRGDAKVLSWLL
GIAKRQIYMRVRRVRPNVTALDDAPEPRDDGPSPETAVLSEAGVDDLMALLRRLPVELVETATLAWLHGLSYRQIADLSD
VPEGTVKSRISRARRLLRAQLDR
>Mature_182_residues
TSPGGAVMRDEDLLARVASGDERAFETLYGRHAAAVRALVRVRVPDAGTAEEVCADVWLGCWRSARAFRGDAKVLSWLLG
IAKRQIYMRVRRVRPNVTALDDAPEPRDDGPSPETAVLSEAGVDDLMALLRRLPVELVETATLAWLHGLSYRQIADLSDV
PEGTVKSRISRARRLLRAQLDR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=175, Percent_Identity=34.2857142857143, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20228; Mature: 20097

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPGGAVMRDEDLLARVASGDERAFETLYGRHAAAVRALVRVRVPDAGTAEEVCADVWL
CCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GCWRSARAFRGDAKVLSWLLGIAKRQIYMRVRRVRPNVTALDDAPEPRDDGPSPETAVLS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
EAGVDDLMALLRRLPVELVETATLAWLHGLSYRQIADLSDVPEGTVKSRISRARRLLRAQ
HCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCHHCCCCHHHHHHHHHHHHHHHHH
LDR
HCC
>Mature Secondary Structure 
TSPGGAVMRDEDLLARVASGDERAFETLYGRHAAAVRALVRVRVPDAGTAEEVCADVWL
CCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GCWRSARAFRGDAKVLSWLLGIAKRQIYMRVRRVRPNVTALDDAPEPRDDGPSPETAVLS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
EAGVDDLMALLRRLPVELVETATLAWLHGLSYRQIADLSDVPEGTVKSRISRARRLLRAQ
HCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCHHCCCCHHHHHHHHHHHHHHHHH
LDR
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]