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The map label for this gene is orn [H]

Identifier: 213692117

GI number: 213692117

Start: 1419937

End: 1420494

Strand: Reverse

Name: orn [H]

Synonym: Blon_1237

Alternate gene names: 213692117

Gene position: 1420494-1419937 (Counterclockwise)

Preceding gene: 213692118

Following gene: 213692116

Centisome position: 50.15

GC content: 68.64

Gene sequence:

>558_bases
ATGAGCACACACGACAATGATGACAAGCCGGTCCGCCTCCTGTGGGTGGACACGGAGACCACGGGCCTCGACCCGCGCAA
GGATCCCATCCTCGAGATCGGCATGATCGCCACCGGCCCCGACCTGAAGCCGGTGGACGACGGGTTCCACACGACCGTCC
ACTGGGAAGGCAAACCGTCCGAATTCATCCAGAGCATGCACGGGCCCAACGGGCTGCTCGCCGAATGCGCGCACCCGAGC
GCCCCCAACATGTTCGCCGCCGCCCTGTCCGCACGCGACTACGTGGTCCGACACCTCGGCCAGGGGGTCCGCCTCCTGCC
CGCCGGCAGCACCGTCCGCTTCGACCGGGACATGCTCGACAGCTGGATGCCCGGCGTCCTCGACGGCTGCTCCCACCGGT
CCCTGGACATCAGCGCCGTCTGCGAGGCGGTCCGCATGTGGAACCCCGCGGCCCTGCCCGGCATGGAACCGTCCACCGAC
CATCGGGTCATGCACTGCCTGGCCGACACGCTCCGCTACGCGCACGCATACCGGGGGCTCATATGCTCGATCGGCTGA

Upstream 100 bases:

>100_bases
CCTCCCCGAGCCCGATTCCGCGACGCCCATGCCCGAGCCTCCGGCGCGCATCCTCCCGTGGAACCCGGACCCGTGGAATG
CGTGACGCATACCCGGGGGC

Downstream 100 bases:

>100_bases
AACACACGCCCGCCCGCCTGTGGGCGTGGCTGAAACGCCTCCCCCGCCGGATCGGCGCATGGACCATGTCCGTCCGCGGC
CGCATCGTATGGACGCGCCT

Product: Exonuclease, RNase T and DNA polymerase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSTHDNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQSMHGPNGLLAECAHPS
APNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLDSWMPGVLDGCSHRSLDISAVCEAVRMWNPAALPGMEPSTD
HRVMHCLADTLRYAHAYRGLICSIG

Sequences:

>Translated_185_residues
MSTHDNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQSMHGPNGLLAECAHPS
APNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLDSWMPGVLDGCSHRSLDISAVCEAVRMWNPAALPGMEPSTD
HRVMHCLADTLRYAHAYRGLICSIG
>Mature_184_residues
STHDNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQSMHGPNGLLAECAHPSA
PNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLDSWMPGVLDGCSHRSLDISAVCEAVRMWNPAALPGMEPSTDH
RVMHCLADTLRYAHAYRGLICSIG

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=178, Percent_Identity=28.6516853932584, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI87082382, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323088, Length=149, Percent_Identity=30.2013422818792, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20296; Mature: 20165

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHDNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPS
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCHH
EFIQSMHGPNGLLAECAHPSAPNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLD
HHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECHHHHH
SWMPGVLDGCSHRSLDISAVCEAVRMWNPAALPGMEPSTDHRVMHCLADTLRYAHAYRGL
HHCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCE
ICSIG
EECCC
>Mature Secondary Structure 
STHDNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPS
CCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCHH
EFIQSMHGPNGLLAECAHPSAPNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLD
HHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECHHHHH
SWMPGVLDGCSHRSLDISAVCEAVRMWNPAALPGMEPSTDHRVMHCLADTLRYAHAYRGL
HHCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCE
ICSIG
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]